Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEA93_RS02830 Genome accession   NZ_CP021980
Coordinates   561932..563158 (-) Length   408 a.a.
NCBI ID   WP_013857686.1    Uniprot ID   A0AAW4AAV2
Organism   Vibrio anguillarum strain 87-9-116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 556932..568158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEA93_RS02790 (CEA93_02790) rpsP 557271..557519 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CEA93_RS02795 (CEA93_02795) rimM 557549..558103 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  CEA93_RS02800 (CEA93_02800) trmD 558131..558877 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CEA93_RS02805 (CEA93_02805) rplS 558919..559272 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  CEA93_RS02810 (CEA93_02810) yacG 559353..559550 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  CEA93_RS02815 (CEA93_02815) zapD 559640..560380 (-) 741 WP_013857689.1 cell division protein ZapD -
  CEA93_RS02820 (CEA93_02820) coaE 560413..561021 (-) 609 WP_013857688.1 dephospho-CoA kinase -
  CEA93_RS02825 (CEA93_02825) pilD 561012..561893 (-) 882 WP_013857687.1 A24 family peptidase Machinery gene
  CEA93_RS02830 (CEA93_02830) pilC 561932..563158 (-) 1227 WP_013857686.1 type II secretion system F family protein Machinery gene
  CEA93_RS02835 (CEA93_02835) pilB 563201..564889 (-) 1689 WP_029189846.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEA93_RS02840 (CEA93_02840) pilA 564899..565324 (-) 426 WP_040122945.1 pilin Machinery gene
  CEA93_RS02845 (CEA93_02845) nadC 565583..566470 (-) 888 WP_013857682.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CEA93_RS02850 (CEA93_02850) ampD 566595..567146 (+) 552 WP_202599069.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CEA93_RS02855 (CEA93_02855) fldB 567168..567686 (-) 519 WP_013857680.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45329.71 Da        Isoelectric Point: 10.4379

>NTDB_id=235560 CEA93_RS02830 WP_013857686.1 561932..563158(-) (pilC) [Vibrio anguillarum strain 87-9-116]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASIHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKFSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=235560 CEA93_RS02830 WP_013857686.1 561932..563158(-) (pilC) [Vibrio anguillarum strain 87-9-116]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAACAGCACATTCAGATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTGGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCTGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCATTCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGCGAACAGTCAGGTAACTTAGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCGCTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAATTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACGGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCCGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGTCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTCGTCGGCGGTTTAGTGGTGGCGATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.5

98.039

0.868
  pilC Vibrio campbellii strain DS40M4

74.752

99.02

0.74
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.059

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment