Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | CEA93_RS02825 | Genome accession | NZ_CP021980 |
| Coordinates | 561012..561893 (-) | Length | 293 a.a. |
| NCBI ID | WP_013857687.1 | Uniprot ID | A0AAW4AAE0 |
| Organism | Vibrio anguillarum strain 87-9-116 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 556012..566893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEA93_RS02790 (CEA93_02790) | rpsP | 557271..557519 (+) | 249 | WP_010319522.1 | 30S ribosomal protein S16 | - |
| CEA93_RS02795 (CEA93_02795) | rimM | 557549..558103 (+) | 555 | WP_013857691.1 | ribosome maturation factor RimM | - |
| CEA93_RS02800 (CEA93_02800) | trmD | 558131..558877 (+) | 747 | WP_010319524.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| CEA93_RS02805 (CEA93_02805) | rplS | 558919..559272 (+) | 354 | WP_010319525.1 | 50S ribosomal protein L19 | - |
| CEA93_RS02810 (CEA93_02810) | yacG | 559353..559550 (-) | 198 | WP_010319526.1 | DNA gyrase inhibitor YacG | - |
| CEA93_RS02815 (CEA93_02815) | zapD | 559640..560380 (-) | 741 | WP_013857689.1 | cell division protein ZapD | - |
| CEA93_RS02820 (CEA93_02820) | coaE | 560413..561021 (-) | 609 | WP_013857688.1 | dephospho-CoA kinase | - |
| CEA93_RS02825 (CEA93_02825) | pilD | 561012..561893 (-) | 882 | WP_013857687.1 | A24 family peptidase | Machinery gene |
| CEA93_RS02830 (CEA93_02830) | pilC | 561932..563158 (-) | 1227 | WP_013857686.1 | type II secretion system F family protein | Machinery gene |
| CEA93_RS02835 (CEA93_02835) | pilB | 563201..564889 (-) | 1689 | WP_029189846.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CEA93_RS02840 (CEA93_02840) | pilA | 564899..565324 (-) | 426 | WP_040122945.1 | pilin | Machinery gene |
| CEA93_RS02845 (CEA93_02845) | nadC | 565583..566470 (-) | 888 | WP_013857682.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 293 a.a. Molecular weight: 32890.17 Da Isoelectric Point: 7.2157
>NTDB_id=235559 CEA93_RS02825 WP_013857687.1 561012..561893(-) (pilD) [Vibrio anguillarum strain 87-9-116]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG
Nucleotide
Download Length: 882 bp
>NTDB_id=235559 CEA93_RS02825 WP_013857687.1 561012..561893(-) (pilD) [Vibrio anguillarum strain 87-9-116]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
77.083 |
98.294 |
0.758 |
| pilD | Vibrio campbellii strain DS40M4 |
76.471 |
98.635 |
0.754 |
| pilD | Acinetobacter nosocomialis M2 |
56.458 |
92.491 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
56.089 |
92.491 |
0.519 |
| pilD | Neisseria gonorrhoeae MS11 |
46.552 |
98.976 |
0.461 |