Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CD007_RS08995 Genome accession   NZ_CP021903
Coordinates   1727415..1728665 (+) Length   416 a.a.
NCBI ID   WP_043940119.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1722415..1733665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS08965 (CD007_08965) ymfH 1722505..1723791 (+) 1287 WP_043940117.1 pitrilysin family protein -
  CD007_RS08970 (CD007_08970) efpI 1723846..1724574 (+) 729 WP_043940118.1 EF-P-5 aminopentanone reductase -
  CD007_RS08975 (CD007_08975) ymfJ 1724655..1724912 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  CD007_RS08980 (CD007_08980) - 1725042..1725833 (+) 792 WP_003220998.1 YmfK family protein -
  CD007_RS08985 (CD007_08985) rodZ 1725900..1726766 (+) 867 WP_014476837.1 cell shape determination protein RodZ -
  CD007_RS08990 (CD007_08990) pgsA 1726816..1727397 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CD007_RS08995 (CD007_08995) cinA 1727415..1728665 (+) 1251 WP_043940119.1 competence/damage-inducible protein A Machinery gene
  CD007_RS09000 (CD007_09000) recA 1728838..1729884 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  CD007_RS09005 (CD007_09005) pbpX 1730052..1731227 (+) 1176 WP_032725712.1 serine hydrolase domain-containing protein -
  CD007_RS09010 (CD007_09010) rny 1731503..1733065 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45509.90 Da        Isoelectric Point: 5.5155

>NTDB_id=234608 CD007_RS08995 WP_043940119.1 1727415..1728665(+) (cinA) [Bacillus subtilis strain ge28]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNAVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGCDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=234608 CD007_RS08995 WP_043940119.1 1727415..1728665(+) (cinA) [Bacillus subtilis strain ge28]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGTTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGTTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGCCGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCTGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.519

100

0.995
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment