Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   S101359_RS08975 Genome accession   NZ_CP021500
Coordinates   1789800..1791050 (+) Length   416 a.a.
NCBI ID   WP_088118477.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1784800..1796050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS08945 (S101359_01765) - 1784883..1786169 (+) 1287 WP_088117181.1 pitrilysin family protein -
  S101359_RS08950 (S101359_01766) - 1786226..1786954 (+) 729 WP_088117182.1 SDR family oxidoreductase -
  S101359_RS08955 (S101359_01767) - 1787035..1787292 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  S101359_RS08960 (S101359_01768) - 1787422..1788213 (+) 792 WP_003328872.1 YmfK family protein -
  S101359_RS08965 (S101359_01769) - 1788232..1789149 (+) 918 WP_010788648.1 RodZ family helix-turn-helix domain-containing protein -
  S101359_RS08970 (S101359_01770) pgsA 1789200..1789781 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  S101359_RS08975 (S101359_01771) cinA 1789800..1791050 (+) 1251 WP_088118477.1 competence/damage-inducible protein A Machinery gene
  S101359_RS08980 (S101359_01772) recA 1791222..1792265 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  S101359_RS08985 (S101359_01773) - 1792550..1793779 (+) 1230 WP_088117183.1 serine hydrolase domain-containing protein -
  S101359_RS08990 (S101359_01774) rny 1794038..1795600 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45270.52 Da        Isoelectric Point: 4.8055

>NTDB_id=231289 S101359_RS08975 WP_088118477.1 1789800..1791050(+) (cinA) [Bacillus atrophaeus strain SRCM101359]
MELGKKAEIIAVGSELLLGQITNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASEIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=231289 S101359_RS08975 WP_088118477.1 1789800..1791050(+) (cinA) [Bacillus atrophaeus strain SRCM101359]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCACCAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTTGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACTAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTCAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGAGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

88.942

100

0.889
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382

Multiple sequence alignment