Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CBR65_RS08200 Genome accession   NZ_CP021382
Coordinates   1986002..1987270 (+) Length   422 a.a.
NCBI ID   WP_087466410.1    Uniprot ID   A0A1Y0FVJ8
Organism   Cellvibrio sp. PSBB006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1974908..1987270 1986002..1987270 within 0


Gene organization within MGE regions


Location: 1974908..1987270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBR65_RS08165 (CBR65_08150) - 1974908..1975456 (-) 549 WP_087466403.1 tetratricopeptide repeat protein -
  CBR65_RS08170 (CBR65_08155) - 1975472..1976314 (-) 843 WP_157672192.1 RHS repeat domain-containing protein -
  CBR65_RS08175 (CBR65_08160) - 1976460..1976687 (-) 228 WP_087466405.1 hypothetical protein -
  CBR65_RS08180 (CBR65_08165) - 1976700..1981223 (-) 4524 WP_198300909.1 RHS repeat-associated core domain-containing protein -
  CBR65_RS08185 (CBR65_08170) - 1981581..1983323 (-) 1743 WP_087466407.1 PglL family O-oligosaccharyltransferase -
  CBR65_RS08190 (CBR65_08175) - 1983374..1983883 (-) 510 WP_087466408.1 pilin -
  CBR65_RS08195 (CBR65_08180) pilB 1984267..1985997 (+) 1731 WP_087466409.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CBR65_RS08200 (CBR65_08185) pilC 1986002..1987270 (+) 1269 WP_087466410.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45504.85 Da        Isoelectric Point: 10.1754

>NTDB_id=230318 CBR65_RS08200 WP_087466410.1 1986002..1987270(+) (pilC) [Cellvibrio sp. PSBB006]
MATVTAQKAKPSRAKAATPKTSVSNVYVYKGIDKKGNKIQGEINGISTAIVKAQLLKQGISAKTVSKKPKPLFGSGKKSI
KAADIAVFSRQMATMMKAGVPLVQAFDIVADGLENPSLRDMVLTIRDDVASGSGFAPSLRKHPKHFDDLFCNLVEAGEQS
GALETMLDRIATYKEKTEALKAKIKKALTYPIAVIVVAIVVTGILLVKVVPQFAATFSSFGANLPAFTLFVLHLSELAQK
WWFLILLGMGGSVFLFKEAVRRSPSFAFMVDKYMLKIPIVGKILYLSVMARFARTLATTFAAGVPLIDALTSVAGAAGNR
IYSEAIIKVREDVSTGIQLNTALRTRNLFPTLLVQMSAIGEESGALDEMLDKVAVYYEEAVDNMVDSLTSLLEPMIMSVL
GVLVGGLMIAMYLPIFQIGQVV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=230318 CBR65_RS08200 WP_087466410.1 1986002..1987270(+) (pilC) [Cellvibrio sp. PSBB006]
ATGGCAACTGTAACCGCACAAAAAGCAAAACCATCAAGAGCCAAGGCCGCCACACCAAAGACATCGGTATCGAATGTTTA
TGTTTATAAAGGGATCGATAAAAAAGGCAACAAAATTCAGGGAGAGATCAATGGCATTAGTACCGCCATTGTAAAAGCAC
AGCTATTGAAGCAGGGCATATCAGCAAAAACCGTCAGCAAAAAGCCTAAACCGTTATTTGGCAGCGGAAAAAAATCAATT
AAAGCGGCTGATATCGCTGTTTTCTCTCGTCAGATGGCCACGATGATGAAAGCAGGGGTTCCTTTGGTTCAGGCGTTTGA
CATTGTCGCAGACGGGCTTGAGAACCCTTCTCTTAGAGATATGGTTCTAACAATCCGTGATGACGTTGCTTCAGGAAGTG
GATTTGCACCTTCACTGAGAAAACATCCTAAACATTTTGATGACCTGTTTTGCAATTTAGTTGAGGCCGGTGAGCAGTCA
GGCGCACTTGAAACAATGCTAGACCGGATCGCAACATATAAAGAAAAAACAGAAGCCCTCAAAGCGAAAATCAAAAAGGC
TTTGACGTACCCAATCGCTGTAATTGTCGTAGCTATAGTAGTAACTGGCATATTACTGGTAAAAGTGGTACCGCAGTTTG
CAGCAACATTTAGCAGCTTTGGCGCAAATCTTCCTGCATTTACTTTATTCGTTTTGCATTTATCGGAGTTAGCGCAAAAG
TGGTGGTTCCTCATTTTGCTGGGAATGGGTGGCTCTGTATTTTTGTTTAAAGAAGCAGTACGTCGCTCCCCGAGTTTCGC
TTTTATGGTTGATAAATATATGCTGAAAATACCCATTGTAGGCAAAATTCTATATCTGTCTGTTATGGCTCGATTTGCCC
GAACGTTAGCTACGACGTTTGCTGCCGGCGTCCCTTTAATTGATGCGCTAACCTCTGTTGCCGGAGCTGCAGGAAATCGA
ATTTACAGCGAAGCGATCATAAAAGTAAGAGAAGATGTCTCTACCGGTATTCAATTGAACACGGCGTTACGCACACGTAA
TTTATTCCCCACATTATTGGTACAAATGTCTGCGATTGGTGAGGAATCCGGTGCTCTCGACGAAATGCTCGACAAAGTAG
CAGTGTATTATGAGGAAGCCGTTGATAACATGGTTGACAGCCTAACCTCATTACTGGAGCCTATGATCATGTCTGTGCTA
GGTGTGTTAGTCGGTGGATTAATGATCGCGATGTATTTGCCCATATTCCAAATCGGTCAAGTTGTATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0FVJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.158

94.55

0.597
  pilC Acinetobacter baylyi ADP1

59.705

96.445

0.576
  pilC Acinetobacter baumannii D1279779

58.722

96.445

0.566
  pilC Legionella pneumophila strain ERS1305867

57.071

93.839

0.536
  pilG Neisseria gonorrhoeae MS11

42.317

94.076

0.398
  pilG Neisseria meningitidis 44/76-A

42.317

94.076

0.398
  pilC Vibrio campbellii strain DS40M4

40.404

93.839

0.379
  pilC Vibrio cholerae strain A1552

40.152

93.839

0.377

Multiple sequence alignment