Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SAG_RS12425 Genome accession   NC_004116
Coordinates   1960613..1961881 (+) Length   422 a.a.
NCBI ID   WP_000774760.1    Uniprot ID   Q8DX76
Organism   Streptococcus agalactiae 2603V/R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1955613..1966881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAG_RS12390 (SAG1969) prmA 1956009..1956962 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  SAG_RS12395 (SAG1970) - 1956959..1957423 (-) 465 WP_306341185.1 MepB family protein -
  SAG_RS12400 (SAG1972) - 1957541..1958257 (+) 717 WP_000859573.1 MerR family transcriptional regulator -
  SAG_RS12405 (SAG1973) - 1958296..1958766 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  SAG_RS12410 (SAG1974) - 1958738..1959196 (-) 459 WP_000350744.1 NUDIX hydrolase -
  SAG_RS12415 (SAG1976) - 1959332..1959802 (-) 471 WP_001051348.1 DUF3013 family protein -
  SAG_RS12420 (SAG1977) - 1960129..1960620 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  SAG_RS12425 (SAG1978) rarA 1960613..1961881 (+) 1269 WP_000774760.1 replication-associated recombination protein A Machinery gene
  SAG_RS12435 (SAG1979) - 1962397..1963158 (-) 762 WP_000147179.1 ABC transporter permease -
  SAG_RS12440 (SAG1980) - 1963155..1964057 (-) 903 WP_000125376.1 ABC transporter ATP-binding protein -
  SAG_RS12445 (SAG1981) - 1964054..1964260 (-) 207 WP_001095354.1 PLDc N-terminal domain-containing protein -
  SAG_RS12450 (SAG1982) - 1964250..1965329 (-) 1080 WP_000578732.1 helix-turn-helix domain-containing protein -
  SAG_RS12455 (SAG1983) - 1965710..1966027 (+) 318 WP_000355464.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  SAG_RS12460 (SAG1984) - 1966024..1966590 (+) 567 WP_000705809.1 TIGR00730 family Rossman fold protein -
  SAG_RS12465 (SAG1985) - 1966644..1966799 (-) 156 WP_000564579.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46572.99 Da        Isoelectric Point: 6.3530

>NTDB_id=22928 SAG_RS12425 WP_000774760.1 1960613..1961881(+) (rarA) [Streptococcus agalactiae 2603V/R]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQCSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=22928 SAG_RS12425 WP_000774760.1 1960613..1961881(+) (rarA) [Streptococcus agalactiae 2603V/R]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DX76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588

Multiple sequence alignment