Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CA935_RS07425 | Genome accession | NZ_CP021258 |
| Coordinates | 1655538..1656758 (+) | Length | 406 a.a. |
| NCBI ID | WP_027221710.1 | Uniprot ID | A0A2S6EZN5 |
| Organism | Legionella pneumophila subsp. fraseri strain D-5744 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1650538..1661758
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA935_RS07405 | - | 1651631..1652200 (-) | 570 | WP_027221706.1 | hypoxanthine-guanine phosphoribosyltransferase | - |
| CA935_RS07410 | - | 1652243..1652569 (-) | 327 | WP_027227020.1 | DUF1820 family protein | - |
| CA935_RS07415 | - | 1652752..1653495 (-) | 744 | WP_027227021.1 | methyltransferase domain-containing protein | - |
| CA935_RS07420 | pilB | 1653808..1655532 (+) | 1725 | WP_027227022.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CA935_RS07425 | pilC | 1655538..1656758 (+) | 1221 | WP_027221710.1 | type II secretion system F family protein | Machinery gene |
| CA935_RS07430 | pilD | 1656804..1657667 (+) | 864 | WP_027227023.1 | A24 family peptidase | Machinery gene |
| CA935_RS07435 | - | 1657681..1658886 (-) | 1206 | WP_027227024.1 | cyclic nucleotide-binding domain-containing protein | - |
| CA935_RS07440 | - | 1658996..1659589 (-) | 594 | WP_027227025.1 | hypothetical protein | - |
| CA935_RS07445 | - | 1659605..1660060 (-) | 456 | WP_027227026.1 | hypothetical protein | - |
| CA935_RS07450 | - | 1660208..1661023 (+) | 816 | WP_027227027.1 | pyruvate, water dikinase regulatory protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44641.85 Da Isoelectric Point: 9.6052
>NTDB_id=229130 CA935_RS07425 WP_027221710.1 1655538..1656758(+) (pilC) [Legionella pneumophila subsp. fraseri strain D-5744]
MDKNAPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGIVTNKVVKKRKPLLDRKNKKITQADITVFSRQLATMI
ESGIPLVQAFDIVAKGQSNKRLKDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEFMQAYWYIIFGALGGVVYSF
FYAKNHSLDFAQTIDRVMLKFPVIGPILEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG
QQMFIAMENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGSAV
MDKNAPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGIVTNKVVKKRKPLLDRKNKKITQADITVFSRQLATMI
ESGIPLVQAFDIVAKGQSNKRLKDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEFMQAYWYIIFGALGGVVYSF
FYAKNHSLDFAQTIDRVMLKFPVIGPILEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG
QQMFIAMENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGSAV
Nucleotide
Download Length: 1221 bp
>NTDB_id=229130 CA935_RS07425 WP_027221710.1 1655538..1656758(+) (pilC) [Legionella pneumophila subsp. fraseri strain D-5744]
ATGGATAAAAATGCCCCACCTTTATTAACCTTTCATTATCAAGGCATCAATAAAGCTGGTCAAAAAATGGAAGGTGATAT
TCAAGCCAGAAGCTTGGCAATAGCTAAAGCTGATTTGCGTAAACAAGGAATAGTCACTAATAAAGTAGTTAAAAAAAGAA
AACCCTTGTTGGATAGAAAAAATAAAAAAATCACGCAAGCGGATATTACAGTGTTTAGCCGCCAATTAGCTACGATGATA
GAGTCAGGGATACCATTAGTACAAGCGTTTGATATTGTTGCCAAAGGACAAAGTAATAAAAGGCTTAAAGACTTGATAGA
AACAATTAAGCACGATATTGAAACGGGGCTAACGCTAGCAGAATCGTTAATTAAACATCCACTCTATTTTAATGAATTAT
TCTGTAATCTTGTCGATGCAGGTGAAAAATCAGGTTCATTAGATATTATGCTTGACAAGGTTGCAACGTATAAAGAAAAA
ATTGAAATCATAAAAAAGAAAATAAAGAAAGCTTTAACTTACCCAATTGCAGTTATGGTTGTCGCGCTTTTGGTTACTGC
AGGATTGTTAATCTACGTGGTTCCTCAATTTGAATCGCTGTTCAAAGGATTTGGCGCTGATTTGCCAGCGATGACCAGAG
CTGTAATTACTATGTCTGAATTTATGCAGGCCTATTGGTATATTATTTTTGGTGCTTTGGGTGGAGTTGTCTATAGCTTT
TTTTATGCCAAAAATCATTCTTTAGATTTCGCGCAAACCATTGACCGAGTAATGCTAAAGTTTCCTGTGATAGGACCCAT
TTTAGAGAAAGCTGCTATTGCTCGATTTGCGAGGACACTATCTATTACTTTTGCTGCTGGATTACCTTTAGTTGAAGCTT
TGAAATCTGTAGCTGGAGCGACTGGAAATATTATTTATGCCAAGGCAACTGATAAAATAAGAGAGGAAGTTGCCACAGGG
CAGCAAATGTTTATTGCTATGGAAAATACCCATTTATTCCCAAATATGGTAATTCAAATGGTAGCAATTGGTGAGGAATC
AGGTGCCCTTGAGAAAATGTTAAGCAAGGTTGCTGATTTTTATGAGGAAGAAGTAAATAATGCTGTAGATGCTCTGAGTA
GTTTATTGGAGCCTATAATTATGTCAATATTAGGCATCCTTGTTGGGGGATTGGTCGTGGCTATGTATTTGCCTATCTTC
AAACTGGGCTCTGCTGTTTAA
ATGGATAAAAATGCCCCACCTTTATTAACCTTTCATTATCAAGGCATCAATAAAGCTGGTCAAAAAATGGAAGGTGATAT
TCAAGCCAGAAGCTTGGCAATAGCTAAAGCTGATTTGCGTAAACAAGGAATAGTCACTAATAAAGTAGTTAAAAAAAGAA
AACCCTTGTTGGATAGAAAAAATAAAAAAATCACGCAAGCGGATATTACAGTGTTTAGCCGCCAATTAGCTACGATGATA
GAGTCAGGGATACCATTAGTACAAGCGTTTGATATTGTTGCCAAAGGACAAAGTAATAAAAGGCTTAAAGACTTGATAGA
AACAATTAAGCACGATATTGAAACGGGGCTAACGCTAGCAGAATCGTTAATTAAACATCCACTCTATTTTAATGAATTAT
TCTGTAATCTTGTCGATGCAGGTGAAAAATCAGGTTCATTAGATATTATGCTTGACAAGGTTGCAACGTATAAAGAAAAA
ATTGAAATCATAAAAAAGAAAATAAAGAAAGCTTTAACTTACCCAATTGCAGTTATGGTTGTCGCGCTTTTGGTTACTGC
AGGATTGTTAATCTACGTGGTTCCTCAATTTGAATCGCTGTTCAAAGGATTTGGCGCTGATTTGCCAGCGATGACCAGAG
CTGTAATTACTATGTCTGAATTTATGCAGGCCTATTGGTATATTATTTTTGGTGCTTTGGGTGGAGTTGTCTATAGCTTT
TTTTATGCCAAAAATCATTCTTTAGATTTCGCGCAAACCATTGACCGAGTAATGCTAAAGTTTCCTGTGATAGGACCCAT
TTTAGAGAAAGCTGCTATTGCTCGATTTGCGAGGACACTATCTATTACTTTTGCTGCTGGATTACCTTTAGTTGAAGCTT
TGAAATCTGTAGCTGGAGCGACTGGAAATATTATTTATGCCAAGGCAACTGATAAAATAAGAGAGGAAGTTGCCACAGGG
CAGCAAATGTTTATTGCTATGGAAAATACCCATTTATTCCCAAATATGGTAATTCAAATGGTAGCAATTGGTGAGGAATC
AGGTGCCCTTGAGAAAATGTTAAGCAAGGTTGCTGATTTTTATGAGGAAGAAGTAAATAATGCTGTAGATGCTCTGAGTA
GTTTATTGGAGCCTATAATTATGTCAATATTAGGCATCCTTGTTGGGGGATTGGTCGTGGCTATGTATTTGCCTATCTTC
AAACTGGGCTCTGCTGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
99.015 |
100 |
0.99 |
| pilC | Acinetobacter baumannii D1279779 |
54.074 |
99.754 |
0.539 |
| pilC | Pseudomonas stutzeri DSM 10701 |
54.293 |
97.537 |
0.53 |
| pilC | Acinetobacter baylyi ADP1 |
53.401 |
97.783 |
0.522 |
| pilG | Neisseria meningitidis 44/76-A |
45.088 |
97.783 |
0.441 |
| pilG | Neisseria gonorrhoeae MS11 |
44.836 |
97.783 |
0.438 |
| pilC | Vibrio cholerae strain A1552 |
42.5 |
98.522 |
0.419 |
| pilC | Vibrio campbellii strain DS40M4 |
39.409 |
100 |
0.394 |