Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CAY62_RS12240 Genome accession   NZ_CP021151
Coordinates   2610266..2611492 (+) Length   408 a.a.
NCBI ID   WP_086367530.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Na-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2605266..2616492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY62_RS12220 (CAY62_12210) pdhR 2605944..2606717 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  CAY62_RS12225 (CAY62_12215) ampD 2607077..2607655 (-) 579 WP_086367527.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CAY62_RS12230 (CAY62_12220) - 2608042..2608494 (+) 453 WP_086367528.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CAY62_RS12235 (CAY62_12225) pilB 2608508..2610199 (+) 1692 WP_086367529.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CAY62_RS12240 (CAY62_12230) pilC 2610266..2611492 (+) 1227 WP_086367530.1 type II secretion system F family protein Machinery gene
  CAY62_RS12245 (CAY62_12235) pilD 2611675..2612553 (+) 879 WP_086367531.1 A24 family peptidase Machinery gene
  CAY62_RS12250 (CAY62_12240) coaE 2612555..2613157 (+) 603 WP_086367532.1 dephospho-CoA kinase -
  CAY62_RS12255 (CAY62_12245) zapD 2613225..2613962 (+) 738 WP_005297594.1 cell division protein ZapD -
  CAY62_RS12260 (CAY62_12250) yacG 2613971..2614180 (+) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  CAY62_RS12265 (CAY62_12255) mutT 2614261..2614701 (+) 441 WP_086367533.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45003.15 Da        Isoelectric Point: 10.0330

>NTDB_id=228614 CAY62_RS12240 WP_086367530.1 2610266..2611492(+) (pilC) [Photobacterium damselae subsp. damselae strain KC-Na-1]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTTPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=228614 CAY62_RS12240 WP_086367530.1 2610266..2611492(+) (pilC) [Photobacterium damselae subsp. damselae strain KC-Na-1]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACTGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
CCCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCGATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCAGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCACTAAAATCAAGCTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCTTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
TGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCAGGTAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373

Multiple sequence alignment