Detailed information NTG0228615

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CAY62_RS12245
• Genome accession: NZ_CP021151
• Coordinates: 2611675..2612553 (+)
• Length: 292 a.a.
• NCBI ID: WP_086367531.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain KC-Na-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2606675..2617553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAY62_RS12225 (CAY62_12215)	ampD	2607077..2607655 (-)	579	WP_086367527.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
CAY62_RS12230 (CAY62_12220)	-	2608042..2608494 (+)	453	WP_086367528.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CAY62_RS12235 (CAY62_12225)	pilB	2608508..2610199 (+)	1692	WP_086367529.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CAY62_RS12240 (CAY62_12230)	pilC	2610266..2611492 (+)	1227	WP_086367530.1	type II secretion system F family protein	Machinery gene
CAY62_RS12245 (CAY62_12235)	pilD	2611675..2612553 (+)	879	WP_086367531.1	A24 family peptidase	Machinery gene
CAY62_RS12250 (CAY62_12240)	coaE	2612555..2613157 (+)	603	WP_086367532.1	dephospho-CoA kinase	-
CAY62_RS12255 (CAY62_12245)	zapD	2613225..2613962 (+)	738	WP_005297594.1	cell division protein ZapD	-
CAY62_RS12260 (CAY62_12250)	yacG	2613971..2614180 (+)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
CAY62_RS12265 (CAY62_12255)	mutT	2614261..2614701 (+)	441	WP_086367533.1	8-oxo-dGTP diphosphatase MutT	-
CAY62_RS12270 (CAY62_12260)	secA	2614802..2617516 (-)	2715	WP_086367534.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32605.13 Da
• Isoelectric Point: 8.0317

>NTDB_id=228615 CAY62_RS12245 WP_086367531.1 2611675..2612553(+) (pilD) [Photobacterium damselae subsp. damselae strain KC-Na-1]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHTPISRRYPMIELLTAALCGTVAILFPPTWWTVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTQKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWICLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=228615 CAY62_RS12245 WP_086367531.1 2611675..2612553(+) (pilD) [Photobacterium damselae subsp. damselae strain KC-Na-1]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATCGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGTTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATTCCTGTTATTAGTTGGCTGGTATTAAAGGGGAAGTGCAAATCCTGTCACACGCCGATTAGCCG
ACGTTACCCAATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGACGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCACTACAAGATTCTGTGATTGG
TGCGATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCCAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCGGTTGTGGTTCTGCTATCCTCTCTT
GCCGGGGCGATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCAGGCTGGATCTGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.411	100	0.654
pilD	Vibrio cholerae strain A1552	61.775	100	0.62
pilD	Acinetobacter baumannii D1279779	52.045	92.123	0.479
pilD	Acinetobacter nosocomialis M2	52.045	92.123	0.479
pilD	Neisseria gonorrhoeae MS11	48.561	95.205	0.462