Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CAP31_RS11585 Genome accession   NZ_CP021138
Coordinates   2289562..2290914 (-) Length   450 a.a.
NCBI ID   WP_087447675.1    Uniprot ID   A0A1Y0GAV4
Organism   Sulfuriferula sp. AH1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2284562..2295914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS11560 (CAP31_11545) - 2285130..2285366 (-) 237 WP_189836617.1 hypothetical protein -
  CAP31_RS11565 (CAP31_11550) glyA 2285655..2286902 (+) 1248 WP_087447671.1 serine hydroxymethyltransferase -
  CAP31_RS11570 (CAP31_11555) nrdR 2286909..2287358 (+) 450 WP_087447672.1 transcriptional regulator NrdR -
  CAP31_RS11575 (CAP31_11560) ribD 2287382..2288467 (+) 1086 WP_087447673.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CAP31_RS11580 (CAP31_11565) - 2288500..2289501 (+) 1002 WP_087447674.1 sodium:calcium antiporter -
  CAP31_RS11585 (CAP31_11570) pilR 2289562..2290914 (-) 1353 WP_087447675.1 sigma-54 dependent transcriptional regulator Regulator
  CAP31_RS11590 (CAP31_11575) - 2290908..2292527 (-) 1620 WP_157662742.1 PAS domain-containing sensor histidine kinase -
  CAP31_RS14850 - 2292527..2292748 (-) 222 WP_157662743.1 PP0621 family protein -
  CAP31_RS11595 (CAP31_11580) ispB 2292886..2293848 (-) 963 WP_223247266.1 octaprenyl diphosphate synthase -
  CAP31_RS11600 (CAP31_11585) rplU 2294011..2294322 (+) 312 WP_087447678.1 50S ribosomal protein L21 -
  CAP31_RS11605 (CAP31_11590) rpmA 2294334..2294594 (+) 261 WP_087447679.1 50S ribosomal protein L27 -
  CAP31_RS11610 (CAP31_11595) cgtA 2294670..2295758 (+) 1089 WP_087447680.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49405.81 Da        Isoelectric Point: 5.2562

>NTDB_id=228511 CAP31_RS11585 WP_087447675.1 2289562..2290914(-) (pilR) [Sulfuriferula sp. AH1]
MLKRQTIGNIPTVLIVDDEADILELLEITLLRMGLDVVKATCVADALTSLKQGEFGLCLTDMRLPDGDGLEIVRYIQAER
PTVPVAVLTAHGNTDNAVTALKAGAFDYINKPVTLEQLRALVKSALKLPGSATASERDLVGNSAAMQQARDLIAKLSRTQ
APVYITGESGSGKELAARLIHQQSNRATTAFVPVNCGAIPENLMESEFFGYKKGAFTGADSERDGFFYAANGGTLFLDEV
ADLPLQMQVKLLRVIQEKKVRRLGSNTEEPIDVRIISATHQHLAKCVEEGRFRQDLFYRLNVITLKMPALRDMREDVPLI
AHTLLARLAAEAGISAPSLTKAAATALAQYDFPGNVRELENILERALALASGVQIDVDDLHLTPAVEETDDNQIALPGMK
WPLQDYLDRLEREAIQEALEKTRYNKTAAAKLLGVTFRALRYRLERLGMD

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=228511 CAP31_RS11585 WP_087447675.1 2289562..2290914(-) (pilR) [Sulfuriferula sp. AH1]
ATGTTAAAGCGTCAGACGATCGGGAATATCCCGACGGTACTCATTGTCGATGATGAAGCGGATATTCTGGAGTTGCTTGA
AATCACGCTGCTGCGTATGGGGCTTGATGTGGTAAAAGCGACTTGCGTGGCAGATGCGCTGACGAGCCTGAAGCAGGGTG
AATTCGGCTTGTGTCTGACGGATATGCGCTTGCCGGATGGGGATGGCCTGGAAATCGTACGTTATATACAGGCAGAGCGG
CCGACTGTCCCGGTGGCGGTCCTTACCGCGCATGGCAATACCGACAATGCGGTGACAGCGTTGAAGGCCGGTGCATTCGA
TTACATCAATAAGCCTGTCACACTTGAGCAATTGCGGGCTCTGGTGAAGTCGGCATTAAAGCTGCCCGGCTCCGCAACCG
CGAGCGAGCGGGATCTGGTCGGTAACTCTGCGGCAATGCAGCAAGCGCGTGATTTGATAGCCAAACTTTCGCGTACCCAG
GCGCCGGTTTACATTACCGGTGAATCGGGGAGCGGCAAGGAGCTTGCGGCGCGATTGATCCATCAGCAAAGCAATCGTGC
TACGACGGCATTTGTGCCAGTCAACTGCGGGGCGATCCCCGAGAATCTGATGGAATCCGAGTTTTTCGGCTATAAAAAAG
GGGCATTTACCGGGGCCGATAGCGAACGCGACGGTTTCTTTTACGCCGCGAACGGCGGCACACTGTTCCTGGATGAAGTG
GCCGATCTGCCCTTGCAGATGCAGGTGAAATTGCTGCGGGTGATACAGGAAAAGAAAGTCCGCAGGCTGGGTAGCAATAC
GGAAGAGCCGATCGATGTGCGCATCATCAGCGCGACCCACCAGCATCTGGCAAAGTGTGTGGAAGAAGGACGTTTCCGTC
AGGACCTGTTTTATCGGCTCAATGTCATTACCCTGAAAATGCCGGCACTGCGCGACATGCGCGAAGACGTCCCGCTGATC
GCACATACGCTGCTGGCGCGGTTGGCGGCGGAGGCGGGAATCAGTGCGCCGAGTTTAACCAAGGCAGCCGCCACCGCATT
GGCGCAGTATGATTTTCCCGGCAATGTGCGCGAACTGGAAAATATCCTGGAGCGTGCGCTGGCCTTGGCGAGTGGCGTGC
AAATCGATGTGGATGATTTGCATCTGACTCCGGCGGTAGAAGAAACAGACGATAATCAGATTGCGCTGCCAGGCATGAAA
TGGCCGCTGCAGGATTATCTGGACAGGCTGGAACGCGAGGCCATTCAGGAGGCACTGGAAAAAACGCGCTATAACAAAAC
GGCTGCGGCCAAATTGCTGGGGGTTACTTTCCGGGCGTTGCGTTATCGCCTGGAGCGTCTGGGTATGGATTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(407-446)

Response regulator receiver domain (Response_reg)

(13-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0GAV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.727

97.778

0.564
  pilR Acinetobacter baumannii strain A118

46.421

100

0.476
  luxO Vibrio cholerae strain A1552

36.242

99.333

0.36

Multiple sequence alignment