Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CAB88_RS19065 Genome accession   NZ_CP021061
Coordinates   3603300..3604538 (-) Length   412 a.a.
NCBI ID   WP_000990687.1    Uniprot ID   A0AAN4HER6
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3598300..3609538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS19040 (CAB88_19025) spoVS 3598709..3598969 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  CAB88_RS19045 (CAB88_19030) - 3599119..3599913 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  CAB88_RS19050 (CAB88_19035) rny 3600076..3601641 (-) 1566 WP_000099769.1 ribonuclease Y -
  CAB88_RS19060 (CAB88_19045) recA 3602124..3603155 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  CAB88_RS19065 (CAB88_19050) cinA 3603300..3604538 (-) 1239 WP_000990687.1 competence/damage-inducible protein CinA Machinery gene
  CAB88_RS19070 (CAB88_19055) pgsA 3604559..3605137 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CAB88_RS19075 (CAB88_19060) - 3605202..3606113 (-) 912 WP_000137473.1 helix-turn-helix domain-containing protein -
  CAB88_RS19080 (CAB88_19065) - 3606135..3606920 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  CAB88_RS19085 (CAB88_19070) - 3607059..3607307 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  CAB88_RS19090 (CAB88_19075) ymfI 3607383..3608096 (-) 714 WP_000759628.1 elongation factor P 5-aminopentanone reductase -
  CAB88_RS19095 (CAB88_19080) yfmH 3608197..3609483 (-) 1287 WP_000411974.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45477.83 Da        Isoelectric Point: 5.6859

>NTDB_id=228073 CAB88_RS19065 WP_000990687.1 3603300..3604538(-) (cinA) [Bacillus thuringiensis strain ATCC 10792]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVREAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=228073 CAB88_RS19065 WP_000990687.1 3603300..3604538(-) (cinA) [Bacillus thuringiensis strain ATCC 10792]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTATTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGAGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment