Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XcfCFBP6165P_RS15915 Genome accession   NZ_CP020998
Coordinates   3692088..3693344 (+) Length   418 a.a.
NCBI ID   WP_007973903.1    Uniprot ID   A0AB34Q195
Organism   Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3691045..3695971 3692088..3693344 within 0


Gene organization within MGE regions


Location: 3691045..3695971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcfCFBP6165P_RS15910 (XcfCFBP6165P_12425) pilE 3691321..3691761 (-) 441 WP_005934296.1 pilin Machinery gene
  XcfCFBP6165P_RS15915 (XcfCFBP6165P_12420) pilC 3692088..3693344 (+) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  XcfCFBP6165P_RS15920 (XcfCFBP6165P_12415) - 3693351..3694214 (+) 864 WP_022558666.1 A24 family peptidase -
  XcfCFBP6165P_RS15925 (XcfCFBP6165P_12410) coaE 3694228..3694836 (+) 609 WP_022558665.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45939.35 Da        Isoelectric Point: 10.3003

>NTDB_id=227732 XcfCFBP6165P_RS15915 WP_007973903.1 3692088..3693344(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=227732 XcfCFBP6165P_RS15915 WP_007973903.1 3692088..3693344(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCACCAAAAGAC
ATCGCATTCTTCAGCCGCCAGATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
AGGGCACAAAAACCCTCGCATGAAAAAAATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAGGGTGCTGGCGTCTTGGAA
ACTGTCCTAGATACAGTTGCGAACTATAAAGAAAATATTGAGGCCCTTAAGGGCAAAATCAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTTAGCGGCATACTATTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCACCGCGCATGCGCCACGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAATAGCTCGATTGCTCGATTTGCCCGAACCACCGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGTGCGACTGGCAATAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCCATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTAAATAATGCCGTGGATGCGCTAAGCAGCCTATTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53.102

96.411

0.512
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.737

0.505
  pilC Acinetobacter baumannii D1279779

52.109

96.411

0.502
  pilC Legionella pneumophila strain ERS1305867

51.478

97.129

0.5
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.646

94.737

0.376
  pilC Thermus thermophilus HB27

37.94

95.215

0.361

Multiple sequence alignment