Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XcfCFBP6996P_RS15845 Genome accession   NZ_CP020989
Coordinates   3760513..3761775 (+) Length   420 a.a.
NCBI ID   WP_099207232.1    Uniprot ID   -
Organism   Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3755513..3766775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcfCFBP6996P_RS15825 (XcfCFBP6996P_20630) - 3756441..3757235 (-) 795 WP_099207229.1 glycosyltransferase family A protein -
  XcfCFBP6996P_RS15830 (XcfCFBP6996P_20625) - 3757239..3757544 (-) 306 WP_234817196.1 SMR family transporter -
  XcfCFBP6996P_RS21840 (XcfCFBP6996P_20620) - 3757920..3758375 (+) 456 WP_269468792.1 pilin -
  XcfCFBP6996P_RS15840 (XcfCFBP6996P_20615) - 3758442..3760403 (+) 1962 WP_099804539.1 hypothetical protein -
  XcfCFBP6996P_RS15845 (XcfCFBP6996P_20610) pilC 3760513..3761775 (+) 1263 WP_099207232.1 type II secretion system F family protein Machinery gene
  XcfCFBP6996P_RS15850 (XcfCFBP6996P_20605) - 3761782..3762645 (+) 864 WP_003491180.1 A24 family peptidase -
  XcfCFBP6996P_RS15855 (XcfCFBP6996P_20600) coaE 3762659..3763270 (+) 612 WP_099804540.1 dephospho-CoA kinase -
  XcfCFBP6996P_RS21705 - 3763452..3765881 (+) 2430 WP_219908907.1 DUF6531 domain-containing protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45947.47 Da        Isoelectric Point: 10.3728

>NTDB_id=227696 XcfCFBP6996P_RS15845 WP_099207232.1 3760513..3761775(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R]
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIIGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=227696 XcfCFBP6996P_RS15845 WP_099207232.1 3760513..3761775(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R]
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGCC
GTAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCCAAGCCGCTATTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAAATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTTTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTGGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCACGCTTCATGGTGTCCTGGTGGTTC
CCAATCCTATTAGTGATCATTGGGTCGGCAGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACACCTGTT
TGATCGTCTGATTTTGAAAGTGCCGGTCATCGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGAACAACCG
CTGTCACCTTCAAGGCGGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTCGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCGGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTCATTGGCACCATC
GTGGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.286

0.507
  pilC Acinetobacter baylyi ADP1

50.369

96.905

0.488
  pilC Legionella pneumophila strain ERS1305867

51.128

95

0.486
  pilC Acinetobacter baumannii D1279779

48.148

96.429

0.464
  pilG Neisseria meningitidis 44/76-A

42.928

95.952

0.412
  pilG Neisseria gonorrhoeae MS11

42.394

95.476

0.405
  pilC Vibrio cholerae strain A1552

39.163

96.667

0.379
  pilC Vibrio campbellii strain DS40M4

39

95.238

0.371
  pilC Thermus thermophilus HB27

38.366

96.19

0.369

Multiple sequence alignment