Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | XcfCFBP6994P_RS16095 | Genome accession | NZ_CP020987 |
| Coordinates | 3803992..3805254 (+) | Length | 420 a.a. |
| NCBI ID | WP_099207232.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6994R | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3798992..3810254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XcfCFBP6994P_RS16075 (XcfCFBP6994P_05135) | - | 3799920..3800714 (-) | 795 | WP_099207229.1 | glycosyltransferase family A protein | - |
| XcfCFBP6994P_RS16080 (XcfCFBP6994P_05140) | - | 3800718..3801023 (-) | 306 | WP_234817196.1 | SMR family transporter | - |
| XcfCFBP6994P_RS22055 (XcfCFBP6994P_05145) | - | 3801399..3801854 (+) | 456 | WP_269468792.1 | pilin | - |
| XcfCFBP6994P_RS16090 (XcfCFBP6994P_05150) | - | 3801921..3803882 (+) | 1962 | WP_099804539.1 | hypothetical protein | - |
| XcfCFBP6994P_RS16095 (XcfCFBP6994P_05155) | pilC | 3803992..3805254 (+) | 1263 | WP_099207232.1 | type II secretion system F family protein | Machinery gene |
| XcfCFBP6994P_RS16100 (XcfCFBP6994P_05160) | - | 3805261..3806124 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| XcfCFBP6994P_RS16105 (XcfCFBP6994P_05165) | coaE | 3806138..3806749 (+) | 612 | WP_099804540.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45947.47 Da Isoelectric Point: 10.3728
>NTDB_id=227679 XcfCFBP6994P_RS16095 WP_099207232.1 3803992..3805254(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6994R]
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIIGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIIGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=227679 XcfCFBP6994P_RS16095 WP_099207232.1 3803992..3805254(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6994R]
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGCC
GTAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCCAAGCCGCTATTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAAATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTTTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTGGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCACGCTTCATGGTGTCCTGGTGGTTC
CCAATCCTATTAGTGATCATTGGGTCGGCAGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACACCTGTT
TGATCGTCTGATTTTGAAAGTGCCGGTCATCGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGAACAACCG
CTGTCACCTTCAAGGCGGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTCGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCGGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTCATTGGCACCATC
GTGGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGCC
GTAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCCAAGCCGCTATTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAAATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTTTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTGGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCACGCTTCATGGTGTCCTGGTGGTTC
CCAATCCTATTAGTGATCATTGGGTCGGCAGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACACCTGTT
TGATCGTCTGATTTTGAAAGTGCCGGTCATCGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGAACAACCG
CTGTCACCTTCAAGGCGGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTCGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCGGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTCATTGGCACCATC
GTGGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.788 |
94.286 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
50.369 |
96.905 |
0.488 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.128 |
95 |
0.486 |
| pilC | Acinetobacter baumannii D1279779 |
48.148 |
96.429 |
0.464 |
| pilG | Neisseria meningitidis 44/76-A |
42.928 |
95.952 |
0.412 |
| pilG | Neisseria gonorrhoeae MS11 |
42.394 |
95.476 |
0.405 |
| pilC | Vibrio cholerae strain A1552 |
39.163 |
96.667 |
0.379 |
| pilC | Vibrio campbellii strain DS40M4 |
39 |
95.238 |
0.371 |
| pilC | Thermus thermophilus HB27 |
38.366 |
96.19 |
0.369 |