Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | XcfCFBP6992P_RS16530 | Genome accession | NZ_CP020985 |
| Coordinates | 3915627..3916889 (+) | Length | 420 a.a. |
| NCBI ID | WP_099207232.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6992 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3910627..3921889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XcfCFBP6992P_RS16510 (XcfCFBP6992P_19250) | - | 3911555..3912349 (-) | 795 | WP_099207229.1 | glycosyltransferase family A protein | - |
| XcfCFBP6992P_RS16515 (XcfCFBP6992P_19255) | - | 3912353..3912658 (-) | 306 | WP_234817196.1 | SMR family transporter | - |
| XcfCFBP6992P_RS22555 (XcfCFBP6992P_19260) | - | 3913034..3913489 (+) | 456 | WP_269468792.1 | pilin | - |
| XcfCFBP6992P_RS16525 (XcfCFBP6992P_19265) | - | 3913556..3915517 (+) | 1962 | WP_099804539.1 | hypothetical protein | - |
| XcfCFBP6992P_RS16530 (XcfCFBP6992P_19270) | pilC | 3915627..3916889 (+) | 1263 | WP_099207232.1 | type II secretion system F family protein | Machinery gene |
| XcfCFBP6992P_RS16535 (XcfCFBP6992P_19275) | - | 3916896..3917759 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| XcfCFBP6992P_RS16540 (XcfCFBP6992P_19280) | coaE | 3917773..3918384 (+) | 612 | WP_099804540.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45947.47 Da Isoelectric Point: 10.3728
>NTDB_id=227662 XcfCFBP6992P_RS16530 WP_099207232.1 3915627..3916889(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6992]
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIIGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIIGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=227662 XcfCFBP6992P_RS16530 WP_099207232.1 3915627..3916889(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6992]
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGCC
GTAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCCAAGCCGCTATTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAAATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTTTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTGGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCACGCTTCATGGTGTCCTGGTGGTTC
CCAATCCTATTAGTGATCATTGGGTCGGCAGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACACCTGTT
TGATCGTCTGATTTTGAAAGTGCCGGTCATCGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGAACAACCG
CTGTCACCTTCAAGGCGGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTCGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCGGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTCATTGGCACCATC
GTGGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGCC
GTAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCCAAGCCGCTATTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAAATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTTTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTGGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCACGCTTCATGGTGTCCTGGTGGTTC
CCAATCCTATTAGTGATCATTGGGTCGGCAGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACACCTGTT
TGATCGTCTGATTTTGAAAGTGCCGGTCATCGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGAACAACCG
CTGTCACCTTCAAGGCGGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTCGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCGGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTCATTGGCACCATC
GTGGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.788 |
94.286 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
50.369 |
96.905 |
0.488 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.128 |
95 |
0.486 |
| pilC | Acinetobacter baumannii D1279779 |
48.148 |
96.429 |
0.464 |
| pilG | Neisseria meningitidis 44/76-A |
42.928 |
95.952 |
0.412 |
| pilG | Neisseria gonorrhoeae MS11 |
42.394 |
95.476 |
0.405 |
| pilC | Vibrio cholerae strain A1552 |
39.163 |
96.667 |
0.379 |
| pilC | Vibrio campbellii strain DS40M4 |
39 |
95.238 |
0.371 |
| pilC | Thermus thermophilus HB27 |
38.366 |
96.19 |
0.369 |