Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XcfCFBP6990P_RS16385 Genome accession   NZ_CP020983
Coordinates   3761270..3762529 (+) Length   419 a.a.
NCBI ID   WP_033836749.1    Uniprot ID   A0A7Z7NHG2
Organism   Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6990     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3756270..3767529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcfCFBP6990P_RS16365 (XcfCFBP6990P_16025) pilR 3756303..3757757 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  XcfCFBP6990P_RS16370 (XcfCFBP6990P_16030) pilB 3758207..3759943 (-) 1737 WP_007965359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcfCFBP6990P_RS16375 (XcfCFBP6990P_16035) pilA2 3759985..3760398 (-) 414 WP_089111877.1 pilin Machinery gene
  XcfCFBP6990P_RS16380 (XcfCFBP6990P_16040) comP 3760496..3760924 (-) 429 WP_007962467.1 pilin Machinery gene
  XcfCFBP6990P_RS16385 (XcfCFBP6990P_16045) pilC 3761270..3762529 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  XcfCFBP6990P_RS16390 (XcfCFBP6990P_16050) - 3762536..3763399 (+) 864 WP_003491180.1 A24 family peptidase -
  XcfCFBP6990P_RS16395 (XcfCFBP6990P_16055) coaE 3763413..3764024 (+) 612 WP_099802201.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45878.36 Da        Isoelectric Point: 10.3363

>NTDB_id=227645 XcfCFBP6990P_RS16385 WP_033836749.1 3761270..3762529(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6990]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=227645 XcfCFBP6990P_RS16385 WP_033836749.1 3761270..3762529(+) (pilC) [Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6990]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAACTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAGCCACTTTTCGGCGCTGCCGGCAAAAAAGTGGGCCCCAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACCATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAGAATCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCAGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATCGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACGCAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATTTTTGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATCGCAAGGTTTGCGCGTACGACCGCCG
TGACCTTCAAGGCCGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTAGCCGAGTACTTCG
AACAGGAAGTCAACAATGCCGTGGATGCGTTAAGCAGCTTGCTGGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7NHG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

52.97

96.42

0.511
  pilC Legionella pneumophila strain ERS1305867

51.605

96.659

0.499
  pilC Acinetobacter baumannii D1279779

51.238

96.42

0.494
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.5

95.465

0.396
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.905

95.704

0.363

Multiple sequence alignment