Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C3K23_RS09055 Genome accession   NZ_CP026490
Coordinates   1941331..1943064 (-) Length   577 a.a.
NCBI ID   WP_023419575.1    Uniprot ID   -
Organism   Streptomyces sp. 604F     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936331..1948064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K23_RS09040 (C3K23_09160) rpoS 1938020..1939093 (+) 1074 WP_164180527.1 RNA polymerase sigma factor Regulator
  C3K23_RS09045 (C3K23_09165) - 1939110..1939325 (-) 216 WP_033948506.1 hypothetical protein -
  C3K23_RS09050 (C3K23_09170) rcrQ 1939415..1941331 (-) 1917 WP_164180529.1 ABC transporter ATP-binding protein Regulator
  C3K23_RS09055 (C3K23_09175) rcrP 1941331..1943064 (-) 1734 WP_023419575.1 ABC transporter ATP-binding protein Regulator
  C3K23_RS09060 (C3K23_09180) - 1943196..1944650 (-) 1455 WP_023419574.1 FGGY-family carbohydrate kinase -
  C3K23_RS09065 (C3K23_09185) - 1944741..1945040 (-) 300 WP_033948503.1 hypothetical protein -
  C3K23_RS09085 (C3K23_09205) - 1945897..1946442 (+) 546 WP_164180531.1 trans-aconitate 2-methyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62574.84 Da        Isoelectric Point: 5.4438

>NTDB_id=227249 C3K23_RS09055 WP_023419575.1 1941331..1943064(-) (rcrP) [Streptomyces sp. 604F]
MLIRLLRTYLRPYQKPIALVMVLQLLQTCAALYLPSLNADIIDRGVVRGDTGVILGLGAVMLAVTLVQMAGNIGAVYFGA
RTAAALGRDVRAAVFDRVQSFSARELNGFGAPSLITRTTNDVQQVQMLALMTFTLMVTAPIMCVGGVIMALGQDVPLSGV
LLAVLPVMAASVGVVVWRLRPLFRSMQKRLDTVNRVLREQITGNRVIRAFVRDRYETERFGRANTDLTEVSLGTGRLLAL
MFPLVMLVVNLSSLAVVWFGAHRIDSGAMEIGSLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETSSSVVP
PAAPVRELAGRGTLELRAAGFRYPGAEEWVLRDVELFAGPGETTAVIGSTGSGKTTLLGLAARLIDPVEGEVLVDGVDIR
RIDPALLARTVGLVPQKPYLFSGTVASNLRYGNPEASDEELWHALEVAQAKEFVERLEGGLEAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALRAETAEAGVVIVAQRVSTIRDADRIVVLDEGRVVAVGRHQDLMERD
ETYRELVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=227249 C3K23_RS09055 WP_023419575.1 1941331..1943064(-) (rcrP) [Streptomyces sp. 604F]
GTGCTCATACGACTCCTGCGGACGTATCTGCGTCCGTACCAGAAACCCATCGCGCTGGTGATGGTGCTCCAACTGCTCCA
GACCTGCGCGGCCCTGTACCTTCCGTCGCTCAACGCGGACATCATCGACCGGGGCGTCGTGCGGGGCGACACGGGCGTCA
TCCTCGGGCTCGGTGCCGTCATGCTGGCGGTCACGCTGGTGCAGATGGCGGGCAACATCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCCGCCCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGGGAGCTGAA
CGGGTTCGGGGCACCGTCCCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACCTTCA
CGCTGATGGTGACGGCCCCCATCATGTGCGTCGGCGGCGTGATCATGGCGCTGGGCCAGGACGTACCGCTCTCCGGGGTG
CTGCTGGCGGTGCTGCCCGTGATGGCGGCCTCGGTCGGCGTGGTCGTCTGGCGGCTGCGGCCGCTCTTCCGCTCCATGCA
GAAGCGGCTGGACACCGTCAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACC
GGTACGAGACCGAGCGGTTCGGCCGCGCCAACACCGACCTGACCGAGGTCTCGCTGGGCACCGGCCGGCTGCTGGCGCTG
ATGTTCCCGCTGGTGATGCTGGTGGTGAACCTGTCCTCGCTGGCCGTGGTCTGGTTCGGTGCCCACCGGATCGACAGCGG
CGCGATGGAGATCGGCTCGCTGACCGCCTTTCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTTCTGGAGACGAGCAGCAGTGTCGTCCCG
CCCGCCGCGCCCGTCCGCGAACTGGCCGGCCGGGGCACGCTGGAGCTGCGGGCCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGTGGGTCCTGCGCGACGTGGAGCTCTTCGCGGGGCCCGGCGAGACCACCGCCGTCATCGGCTCGACCGGCTCCGGCA
AGACCACGCTGCTCGGCCTCGCCGCCCGGCTGATCGACCCCGTCGAGGGCGAGGTGCTGGTCGACGGCGTCGACATCCGC
CGGATCGACCCGGCCCTGCTGGCCCGCACCGTCGGCCTCGTTCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTGGCGAG
CAACCTGCGGTACGGCAACCCGGAGGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTGGAGGCCCCCGTCTCGCAGGGCGGGACCAACGTCTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGCACTCTGGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCCCTGCGCGCGGAGACAGCCGAGGCGGGCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTGGTGGCGGTCGGCCGCCACCAGGACCTGATGGAACGGGAC
GAGACCTACCGGGAGCTCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.112

99.133

0.378

Multiple sequence alignment