Detailed information NTG0022659

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PD_RS10190
• Genome accession: NC_004556
• Coordinates: 2255112..2256314 (-)
• Length: 400 a.a.
• NCBI ID: WP_011098309.1
• Uniprot ID: -
• Organism: Xylella fastidiosa Temecula1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2250112..2261314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PD_RS10170 (PD1919)	-	2251333..2252010 (+)	678	WP_010894955.1	response regulator transcription factor	-
PD_RS10175 (PD1920)	-	2252003..2253340 (+)	1338	WP_004090387.1	sensor histidine kinase	-
PD_RS10180 (PD1921)	coaE	2253607..2254230 (-)	624	WP_004090385.1	dephospho-CoA kinase	-
PD_RS10185 (PD1922)	-	2254242..2255105 (-)	864	WP_004084594.1	prepilin peptidase	-
PD_RS10190 (PD1923)	pilC	2255112..2256314 (-)	1203	WP_011098309.1	type II secretion system F family protein	Machinery gene
PD_RS10195 (PD1924)	-	2256755..2257201 (+)	447	WP_004090380.1	pilin	-
PD_RS10200 (PD1925)	-	2257447..2257674 (-)	228	WP_011098310.1	hypothetical protein	-
PD_RS10205 (PD1926)	-	2258510..2258950 (+)	441	WP_004090375.1	pilin	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44098.02 Da
• Isoelectric Point: 10.1299

>NTDB_id=22659 PD_RS10190 WP_011098309.1 2255112..2256314(-) (pilC) [Xylella fastidiosa Temecula1]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=22659 PD_RS10190 WP_011098309.1 2255112..2256314(-) (pilC) [Xylella fastidiosa Temecula1]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGCTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GTGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGGTTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TTATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGTTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTTTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.75	100	0.548
pilC	Legionella pneumophila strain ERS1305867	52.346	100	0.53
pilC	Acinetobacter baylyi ADP1	51.25	100	0.513
pilC	Acinetobacter baumannii D1279779	50.75	100	0.508
pilG	Neisseria gonorrhoeae MS11	43.467	99.5	0.432
pilG	Neisseria meningitidis 44/76-A	42.965	99.5	0.428
pilC	Vibrio cholerae strain A1552	40.943	100	0.413
pilC	Vibrio campbellii strain DS40M4	40.399	100	0.405
pilC	Thermus thermophilus HB27	37.352	100	0.395