Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   B7941_RS11110 Genome accession   NZ_CP020805
Coordinates   2199753..2201003 (+) Length   416 a.a.
NCBI ID   WP_085341999.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2194753..2206003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS11080 (B7941_11070) yfmH 2194837..2196123 (+) 1287 WP_015239876.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  B7941_RS11085 (B7941_11075) ymfI 2196183..2196911 (+) 729 WP_015239877.1 elongation factor P 5-aminopentanone reductase -
  B7941_RS11090 (B7941_11080) - 2196987..2197244 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  B7941_RS11095 (B7941_11085) - 2197372..2198163 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  B7941_RS11100 (B7941_11090) - 2198182..2199081 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  B7941_RS11105 (B7941_11095) pgsA 2199154..2199735 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B7941_RS11110 (B7941_11100) cinA 2199753..2201003 (+) 1251 WP_085341999.1 competence/damage-inducible protein A Machinery gene
  B7941_RS11115 (B7941_11105) recA 2201174..2202217 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  B7941_RS11120 (B7941_11110) - 2202385..2203566 (+) 1182 WP_085342000.1 serine hydrolase domain-containing protein -
  B7941_RS11125 (B7941_11115) rny 2203859..2205418 (+) 1560 WP_085342001.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45099.45 Da        Isoelectric Point: 5.2580

>NTDB_id=225952 B7941_RS11110 WP_085341999.1 2199753..2201003(+) (cinA) [Bacillus velezensis strain 9D-6]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDLQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=225952 B7941_RS11110 WP_085341999.1 2199753..2201003(+) (cinA) [Bacillus velezensis strain 9D-6]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGTGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCCGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTTA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACACTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCTGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae R6

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.651

100

0.469
  cinA Streptococcus pneumoniae D39

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment