Detailed information NTG0022579

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: SE_RS05820
• Genome accession: NC_004461
• Coordinates: 1262127..1263101 (-)
• Length: 324 a.a.
• NCBI ID: WP_001831109.1
• Uniprot ID: A0A9Q5JKD6
• Organism: Staphylococcus epidermidis ATCC 12228
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1257127..1268101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE_RS05785 (SE1222)	gcvT	1257645..1258736 (-)	1092	WP_001831107.1	glycine cleavage system aminomethyltransferase GcvT	-
SE_RS05790 (SE1224)	-	1258954..1259466 (-)	513	WP_002440040.1	shikimate kinase	-
SE_RS05795 (SE1225)	-	1259631..1260122 (-)	492	WP_002440043.1	competence type IV pilus minor pilin ComGF	-
SE_RS05800 (SE1226)	-	1260046..1260339 (-)	294	WP_001831116.1	hypothetical protein	-
SE_RS05805 (SE1227)	comGD	1260326..1260763 (-)	438	WP_001831025.1	competence type IV pilus minor pilin ComGD	-
SE_RS05810 (SE1228)	comGC	1260753..1261070 (-)	318	WP_001831271.1	competence type IV pilus major pilin ComGC	Machinery gene
SE_RS05815 (SE1229)	comGB	1261088..1262155 (-)	1068	WP_001831131.1	competence type IV pilus assembly protein ComGB	Machinery gene
SE_RS05820 (SE1230)	comGA	1262127..1263101 (-)	975	WP_001831109.1	competence type IV pilus ATPase ComGA	Machinery gene
SE_RS05825 (SE1231)	-	1263158..1263781 (-)	624	WP_001831016.1	MBL fold metallo-hydrolase	-
SE_RS05830 (SE1232)	-	1263781..1264107 (-)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
SE_RS05835 (SE1233)	-	1264107..1265093 (-)	987	WP_001831113.1	ROK family glucokinase	-
SE_RS05840 (SE1234)	-	1265093..1265293 (-)	201	WP_001831138.1	YqgQ family protein	-
SE_RS05845 (SE1235)	-	1265277..1266737 (-)	1461	WP_001832757.1	rhomboid family protein	-
SE_RS05850 (SE1236)	-	1266738..1267289 (-)	552	WP_001831001.1	5-formyltetrahydrofolate cyclo-ligase	-
SE_RS05855 (SE1237)	rpmG	1267472..1267621 (-)	150	WP_001830957.1	50S ribosomal protein L33	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37330.44 Da
• Isoelectric Point: 8.8174

>NTDB_id=22579 SE_RS05820 WP_001831109.1 1262127..1263101(-) (comGA) [Staphylococcus epidermidis ATCC 12228]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=22579 SE_RS05820 WP_001831109.1 1262127..1263101(-) (comGA) [Staphylococcus epidermidis ATCC 12228]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.062	100	0.701
comGA	Staphylococcus aureus N315	70.062	100	0.701