Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | SE_RS05815 | Genome accession | NC_004461 |
| Coordinates | 1261088..1262155 (-) | Length | 355 a.a. |
| NCBI ID | WP_001831131.1 | Uniprot ID | A0A9Q5JLH5 |
| Organism | Staphylococcus epidermidis ATCC 12228 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1256088..1267155
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE_RS05780 (SE1221) | gcvPA | 1256279..1257625 (-) | 1347 | WP_002456181.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| SE_RS05785 (SE1222) | gcvT | 1257645..1258736 (-) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| SE_RS05790 (SE1224) | - | 1258954..1259466 (-) | 513 | WP_002440040.1 | shikimate kinase | - |
| SE_RS05795 (SE1225) | - | 1259631..1260122 (-) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| SE_RS05800 (SE1226) | - | 1260046..1260339 (-) | 294 | WP_001831116.1 | hypothetical protein | - |
| SE_RS05805 (SE1227) | comGD | 1260326..1260763 (-) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| SE_RS05810 (SE1228) | comGC | 1260753..1261070 (-) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SE_RS05815 (SE1229) | comGB | 1261088..1262155 (-) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SE_RS05820 (SE1230) | comGA | 1262127..1263101 (-) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SE_RS05825 (SE1231) | - | 1263158..1263781 (-) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| SE_RS05830 (SE1232) | - | 1263781..1264107 (-) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| SE_RS05835 (SE1233) | - | 1264107..1265093 (-) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| SE_RS05840 (SE1234) | - | 1265093..1265293 (-) | 201 | WP_001831138.1 | YqgQ family protein | - |
| SE_RS05845 (SE1235) | - | 1265277..1266737 (-) | 1461 | WP_001832757.1 | rhomboid family protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42379.68 Da Isoelectric Point: 10.1702
>NTDB_id=22578 SE_RS05815 WP_001831131.1 1261088..1262155(-) (comGB) [Staphylococcus epidermidis ATCC 12228]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVRIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVRIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=22578 SE_RS05815 WP_001831131.1 1261088..1262155(-) (comGB) [Staphylococcus epidermidis ATCC 12228]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCGTATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCGTATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.719 |
100 |
0.499 |
| comGB | Staphylococcus aureus N315 |
49.719 |
100 |
0.499 |