Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SPYM18_RS04960 Genome accession   NC_003485
Coordinates   956631..957701 (-) Length   356 a.a.
NCBI ID   WP_011017790.1    Uniprot ID   Q8P0Y8
Organism   Streptococcus pyogenes MGAS8232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951631..962701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM18_RS04940 (spyM18_1141) citX 952212..952790 (+) 579 WP_011017787.1 citrate lyase holo-[acyl-carrier protein] synthase -
  SPYM18_RS04945 (spyM18_1142) - 952805..954199 (+) 1395 WP_023079460.1 oxaloacetate decarboxylase subunit alpha -
  SPYM18_RS04950 (spyM18_1143) citC 954309..955361 (-) 1053 WP_011017789.1 [citrate (pro-3S)-lyase] ligase -
  SPYM18_RS04955 (spyM18_1144) - 955450..955932 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  SPYM18_RS04960 (spyM18_1147) xerS 956631..957701 (-) 1071 WP_011017790.1 tyrosine recombinase XerS Machinery gene
  SPYM18_RS04965 (spyM18_1150) - 958164..958862 (+) 699 WP_011017791.1 LexA family transcriptional regulator -
  SPYM18_RS04970 (spyM18_1151) ffh 958997..960559 (-) 1563 WP_011017792.1 signal recognition particle protein -
  SPYM18_RS04975 (spyM18_1152) - 960574..960906 (-) 333 WP_002989745.1 putative DNA-binding protein -
  SPYM18_RS04980 (spyM18_1153) - 961004..961702 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41485.59 Da        Isoelectric Point: 9.5552

>NTDB_id=22577 SPYM18_RS04960 WP_011017790.1 956631..957701(-) (xerS) [Streptococcus pyogenes MGAS8232]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAIPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=22577 SPYM18_RS04960 WP_011017790.1 956631..957701(-) (xerS) [Streptococcus pyogenes MGAS8232]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTATTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCACCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTAAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGTGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P0Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment