Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SO_RS02005 Genome accession   NC_004347
Coordinates   430085..431356 (-) Length   423 a.a.
NCBI ID   WP_011070775.1    Uniprot ID   Q8EJP7
Organism   Shewanella oneidensis MR-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425085..436356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO_RS01975 (SO_0409) - 426070..426606 (-) 537 WP_011070769.1 thioredoxin family protein -
  SO_RS01980 (SO_0410) mutT 426745..427137 (-) 393 WP_011070770.1 8-oxo-dGTP diphosphatase MutT -
  SO_RS01985 (SO_0411) yacG 427225..427434 (-) 210 WP_011070771.1 DNA gyrase inhibitor YacG -
  SO_RS01990 (SO_0412) zapD 427495..428229 (-) 735 WP_011070772.1 cell division protein ZapD -
  SO_RS01995 (SO_0413) coaE 428222..428839 (-) 618 WP_011070773.1 dephospho-CoA kinase -
  SO_RS02000 (SO_0414) pilD 428993..429919 (-) 927 WP_011070774.1 prepilin peptidase Machinery gene
  SO_RS02005 (SO_0415) pilC 430085..431356 (-) 1272 WP_011070775.1 type II secretion system F family protein Machinery gene
  SO_RS02010 (SO_0416) pilB 431608..433317 (-) 1710 WP_011070776.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SO_RS02015 (SO_0417) - 433391..433807 (-) 417 WP_011070777.1 pilin -
  SO_RS02020 (SO_0419) nadC 434288..435169 (-) 882 WP_011070778.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SO_RS02025 (SO_0421) ampD 435463..436008 (+) 546 WP_011070779.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46064.36 Da        Isoelectric Point: 10.2290

>NTDB_id=22393 SO_RS02005 WP_011070775.1 430085..431356(-) (pilC) [Shewanella oneidensis MR-1]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDPKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=22393 SO_RS02005 WP_011070775.1 430085..431356(-) (pilC) [Shewanella oneidensis MR-1]
ATGGCTACGGCAACGACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAACCGCGATGGCCAAAAAACCAGTGGCGAGCTGCGGGGTGCTTCTGCGGCAGAGATCCGCAGCCAGC
TAAAATCCCAAGGGGTAAATCCTAAAACGGTACGCAAACAATCGGCCGCCCTATTTAAATTAGGTGATCCCAAAATTACC
CCAATGGATATCGCCATGGTGACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTACCGTTAGTCACCACCATTGAATT
ACTGGGCCGCGGCCATGAAAAAGTCAAAATGCGTGAGCTACTAGCAACGATTCTTTCAGAAATCCAATCGGGTATTCCAT
TGTCCGATGCGCTGCGCCCCCATCGACGCTATTTTGATGATCTCTATGTCGACTTGGTCGCCGCAGGTGAGCATTCGGGT
TCCTTGGATGTGGTATTCGATCGTATTGCTACCTACCGCGAAAAATCTGAGGCCTTAAAGTCAAAAATCAAAAAAGCCAT
GTTTTATCCTGCTGCGGTAGTGATTGTGGCCATTTTAGTGACTGCATTACTGTTACTCTTTGTGGTGCCACAATTCGAAG
ATATTTTTAAGGGCTTTGGGGCCGAGTTACCCGCTTTTACCCAATTAGTACTGCAAATCTCCCGAGGCTTACAATCCTCT
TGGTATATCTTCTTAGGTGCAATTGTGGCTGGCGTATTTTTATTTGTCCGCGCCCACCGAAACTCTCAAATAGTGAGGGA
TAGAGTGGATGAAGCCGTCTTAAAAATTCCGGCGATTGGGCCGATTTTACACAAAGGTGCTATGGCACGTTTTGCCCGCA
CCTTAGCCACCACCTTTGCCGCTGGCGTACCATTGATTGATGGTTTAGAGTCCGCGGCGGGGGCATCGGGTAATGCGGTA
TATCGTAAAGCCATTTTAAAAATCCGTCAGGAAGTGATGGCGGGGATGCAAATGAACGTGGCCATGCGAACCACTGGGCT
GTTCCCCGATATGCTGATCCAAATGGTGATGATTGGCGAAGAGTCAGGCTCACTCGATAATATGCTCAATAAGGTTTCAA
CCATCTATGAGATGCAGGTGGATGATGCCGTGGATGGTTTATCCAGCTTGATTGAACCTATTATGATGGTGGTGATTGGT
ACTGTCGTCGGCGGCCTTATTGTTGCTATGTATCTACCCATCTTCCAAATGGGTAAAGTAGTTGGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8EJP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50

95.508

0.478
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.63

93.853

0.475
  pilC Vibrio cholerae strain A1552

47.87

94.326

0.452
  pilC Vibrio campbellii strain DS40M4

44.499

96.69

0.43
  pilG Neisseria meningitidis 44/76-A

41.542

95.035

0.395
  pilG Neisseria gonorrhoeae MS11

41.542

95.035

0.395

Multiple sequence alignment