Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A6J87_RS08135 Genome accession   NZ_CP020451
Coordinates   1582652..1584622 (+) Length   656 a.a.
NCBI ID   WP_070579760.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577652..1589622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS08120 (A6J87_08090) - 1578370..1579266 (+) 897 WP_002884380.1 RluA family pseudouridine synthase -
  A6J87_RS08125 (A6J87_08095) pta 1579280..1580263 (+) 984 WP_080611879.1 phosphate acetyltransferase -
  A6J87_RS08130 (A6J87_08100) amiA 1580500..1582470 (+) 1971 WP_080611880.1 peptide ABC transporter substrate-binding protein Regulator
  A6J87_RS08135 (A6J87_08105) amiA 1582652..1584622 (+) 1971 WP_070579760.1 peptide ABC transporter substrate-binding protein Regulator
  A6J87_RS08140 (A6J87_08110) amiC 1584683..1586176 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  A6J87_RS08145 (A6J87_08115) amiD 1586176..1587102 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  A6J87_RS08150 (A6J87_08120) amiE 1587112..1588197 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  A6J87_RS08155 (A6J87_08125) amiF 1588190..1589119 (+) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72921.29 Da        Isoelectric Point: 5.2837

>NTDB_id=223271 A6J87_RS08135 WP_070579760.1 1582652..1584622(+) (amiA) [Streptococcus salivarius strain FDAARGOS_259]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPVHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=223271 A6J87_RS08135 WP_070579760.1 1582652..1584622(+) (amiA) [Streptococcus salivarius strain FDAARGOS_259]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTAACTTATACATACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACTGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCTTACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTATGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAAAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAGTTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTTGGTAAAGAAAATGTTGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGACAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCAGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGAGCCTACTCTCAAGTAGGACCTAAAGGTTCTGACAGATACT
TCAAGTACCTCGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.305

100

0.753
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

75.038

100

0.752

Multiple sequence alignment