Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   A6J87_RS08140 Genome accession   NZ_CP020451
Coordinates   1584683..1586176 (+) Length   497 a.a.
NCBI ID   WP_060971834.1    Uniprot ID   A0AA45CT26
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579683..1591176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS08130 (A6J87_08100) amiA 1580500..1582470 (+) 1971 WP_080611880.1 peptide ABC transporter substrate-binding protein Regulator
  A6J87_RS08135 (A6J87_08105) amiA 1582652..1584622 (+) 1971 WP_070579760.1 peptide ABC transporter substrate-binding protein Regulator
  A6J87_RS08140 (A6J87_08110) amiC 1584683..1586176 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  A6J87_RS08145 (A6J87_08115) amiD 1586176..1587102 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  A6J87_RS08150 (A6J87_08120) amiE 1587112..1588197 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  A6J87_RS08155 (A6J87_08125) amiF 1588190..1589119 (+) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  A6J87_RS08160 (A6J87_08130) - 1589172..1589957 (-) 786 WP_070576856.1 ABC transporter permease -
  A6J87_RS08165 (A6J87_08135) - 1589969..1590667 (-) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  A6J87_RS08170 (A6J87_08140) - 1590672..1591049 (-) 378 WP_021143815.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55889.65 Da        Isoelectric Point: 9.9934

>NTDB_id=223272 A6J87_RS08140 WP_060971834.1 1584683..1586176(+) (amiC) [Streptococcus salivarius strain FDAARGOS_259]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=223272 A6J87_RS08140 WP_060971834.1 1584683..1586176(+) (amiC) [Streptococcus salivarius strain FDAARGOS_259]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCAACACGTGATGTTCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATATTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACCTCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCAACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATCCGTTTGATTGGTTCTGAGATTGGTCTTCCAGACTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTATATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.195

100

0.992
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.787

100

0.978

Multiple sequence alignment