Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   A6J87_RS08155 Genome accession   NZ_CP020451
Coordinates   1588190..1589119 (+) Length   309 a.a.
NCBI ID   WP_002884751.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583190..1594119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS08140 (A6J87_08110) amiC 1584683..1586176 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  A6J87_RS08145 (A6J87_08115) amiD 1586176..1587102 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  A6J87_RS08150 (A6J87_08120) amiE 1587112..1588197 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  A6J87_RS08155 (A6J87_08125) amiF 1588190..1589119 (+) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  A6J87_RS08160 (A6J87_08130) - 1589172..1589957 (-) 786 WP_070576856.1 ABC transporter permease -
  A6J87_RS08165 (A6J87_08135) - 1589969..1590667 (-) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  A6J87_RS08170 (A6J87_08140) - 1590672..1591049 (-) 378 WP_021143815.1 GntR family transcriptional regulator -
  A6J87_RS08175 (A6J87_08145) - 1591231..1592025 (+) 795 WP_021143816.1 HAD-IIB family hydrolase -
  A6J87_RS08180 (A6J87_08150) - 1592018..1592836 (+) 819 WP_014634817.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35020.08 Da        Isoelectric Point: 6.5822

>NTDB_id=223275 A6J87_RS08155 WP_002884751.1 1588190..1589119(+) (amiF) [Streptococcus salivarius strain FDAARGOS_259]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=223275 A6J87_RS08155 WP_002884751.1 1588190..1589119(+) (amiF) [Streptococcus salivarius strain FDAARGOS_259]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGA
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAAATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977

Multiple sequence alignment