Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A6J87_RS08130 Genome accession   NZ_CP020451
Coordinates   1580500..1582470 (+) Length   656 a.a.
NCBI ID   WP_080611880.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575500..1587470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS08105 (A6J87_08075) - 1576220..1576795 (-) 576 WP_002886838.1 CYTH domain-containing protein -
  A6J87_RS08110 (A6J87_08080) - 1576891..1577565 (+) 675 WP_014634828.1 GTP pyrophosphokinase family protein -
  A6J87_RS08115 (A6J87_08085) - 1577537..1578373 (+) 837 WP_080611878.1 NAD kinase -
  A6J87_RS08120 (A6J87_08090) - 1578370..1579266 (+) 897 WP_002884380.1 RluA family pseudouridine synthase -
  A6J87_RS08125 (A6J87_08095) pta 1579280..1580263 (+) 984 WP_080611879.1 phosphate acetyltransferase -
  A6J87_RS08130 (A6J87_08100) amiA 1580500..1582470 (+) 1971 WP_080611880.1 peptide ABC transporter substrate-binding protein Regulator
  A6J87_RS08135 (A6J87_08105) amiA 1582652..1584622 (+) 1971 WP_070579760.1 peptide ABC transporter substrate-binding protein Regulator
  A6J87_RS08140 (A6J87_08110) amiC 1584683..1586176 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  A6J87_RS08145 (A6J87_08115) amiD 1586176..1587102 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71959.72 Da        Isoelectric Point: 4.8663

>NTDB_id=223270 A6J87_RS08130 WP_080611880.1 1580500..1582470(+) (amiA) [Streptococcus salivarius strain FDAARGOS_259]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFILKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYSSVEKKYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKETLQADGVQFPIHLDLPVDQSSKINVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDIQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=223270 A6J87_RS08130 WP_080611880.1 1580500..1582470(+) (amiA) [Streptococcus salivarius strain FDAARGOS_259]
ATGAAAAAAAGCAAATGGTTAGCCCTCGCGGGTGTAGCCCTTCTAAGTGTTGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGACCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTGGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAGTTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCGGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCATTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATTCTTCTGTAGAGAAGAAATATAAAGATAACATTTATT
ACACTGCACCAGGTGCGTCTACATCAGCCATTGGTGTTAATATCGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTTCGTAACCTTTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTCAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAACTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAAGTTCTAAAATCAATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAGCAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTATCATCTGATGACATACAAAAT
GCAACCCTTAACGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

99.39

100

0.994
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904

Multiple sequence alignment