Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   A6J87_RS04455 Genome accession   NZ_CP020451
Coordinates   894591..895856 (-) Length   421 a.a.
NCBI ID   WP_070575131.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 889591..900856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS04445 (A6J87_04425) spx 892844..893242 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  A6J87_RS04450 (A6J87_04430) recA 893411..894550 (-) 1140 WP_002889600.1 recombinase RecA Machinery gene
  A6J87_RS04455 (A6J87_04435) cinA 894591..895856 (-) 1266 WP_070575131.1 competence/damage-inducible protein A Machinery gene
  A6J87_RS04460 (A6J87_04440) - 895953..896507 (-) 555 WP_080611618.1 DNA-3-methyladenine glycosylase I -
  A6J87_RS04465 (A6J87_04445) ruvA 896516..897106 (-) 591 WP_080611619.1 Holliday junction branch migration protein RuvA -
  A6J87_RS04470 (A6J87_04450) - 897264..897485 (-) 222 WP_037597288.1 hypothetical protein -
  A6J87_RS04475 (A6J87_04455) mutL 897616..899553 (-) 1938 WP_080611621.1 DNA mismatch repair endonuclease MutL -
  A6J87_RS04480 (A6J87_04460) - 899605..899910 (-) 306 WP_070575143.1 hypothetical protein -
  A6J87_RS04485 (A6J87_04465) - 900089..900526 (+) 438 WP_037599421.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45573.90 Da        Isoelectric Point: 6.2680

>NTDB_id=223245 A6J87_RS04455 WP_070575131.1 894591..895856(-) (cinA) [Streptococcus salivarius strain FDAARGOS_259]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKKLIFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGVITAQGVTYVVLPGPPSELKPM
VNQELVPALTENHASLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSREEADQKLDVLEKQ
IRSIKTLDGKSLSDFIYGYGESNSLAFEAFRLLKNQGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKSKM
LDIPLSQLEKHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQETT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=223245 A6J87_RS04455 WP_070575131.1 894591..895856(-) (cinA) [Streptococcus salivarius strain FDAARGOS_259]
ATGAAAGCTGAATTGATTGCAGTAGGAACCGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATCGATGTGTATTTTCACACAGCAGTAGGAGACAATGAAAACCGCCTACTCTCAGTTCTAG
ACCAAGCTAGTAAACGTAGTGATTTAGTCATACTTTGTGGAGGACTTGGTCCTACTGAGGATGACTTAACCAAGCAAACC
CTAGCTAAGTTCTTAGGAAAAAAACTTATTTTTGATGAGGAGGCAAGTAAAAAGCTGGACAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCGCAAATTGTTGAGGGGGCTATCCCCTTGCAAAATCCTACAGGTC
TTGCAGTTGGAGGCGTCATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAGGAACTTGTTCCAGCACTTACTGAGAATCACGCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTGGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCACGAGAAGAAGCGGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCTATTAAAACTCTAGATGGCAAATCCTTATCTGATTTTATTTATGGGTATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGAACCAAGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTATTTAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAAAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAGACAACTTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-244)

Competence-damaged protein (CinA)

(264-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.463

99.525

0.741
  cinA Streptococcus mitis NCTC 12261

73.747

99.525

0.734
  cinA Streptococcus pneumoniae TIGR4

73.508

99.525

0.732
  cinA Streptococcus pneumoniae Rx1

73.27

99.525

0.729
  cinA Streptococcus pneumoniae R6

73.27

99.525

0.729
  cinA Streptococcus pneumoniae D39

73.031

99.525

0.727
  cinA Streptococcus mutans UA159

70.743

99.05

0.701
  cinA Streptococcus suis isolate S10

55.048

98.812

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

45.131

100

0.451

Multiple sequence alignment