Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   A6J85_RS06595 Genome accession   NZ_CP020450
Coordinates   1317804..1318469 (+) Length   221 a.a.
NCBI ID   WP_082307453.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312804..1323469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS06575 (A6J85_06495) - 1313051..1313797 (-) 747 WP_105165119.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  A6J85_RS06580 (A6J85_06500) - 1313902..1316271 (-) 2370 WP_048777519.1 cation-translocating P-type ATPase -
  A6J85_RS06585 (A6J85_06505) - 1316401..1317141 (+) 741 WP_041789898.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  A6J85_RS06590 (A6J85_06510) - 1317180..1317707 (+) 528 WP_082307452.1 HXXEE domain-containing protein -
  A6J85_RS06595 (A6J85_06515) comEA/celA/cilE 1317804..1318469 (+) 666 WP_082307453.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J85_RS06600 (A6J85_06520) comEC/celB 1318453..1320693 (+) 2241 WP_082307454.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6J85_RS06605 (A6J85_06525) holA 1320784..1321821 (+) 1038 WP_096755043.1 DNA polymerase III subunit delta -
  A6J85_RS06610 (A6J85_06530) - 1321894..1322499 (+) 606 WP_045773124.1 superoxide dismutase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23500.19 Da        Isoelectric Point: 4.7123

>NTDB_id=223199 A6J85_RS06595 WP_082307453.1 1317804..1318469(+) (comEA/celA/cilE) [Streptococcus gordonii strain FDAARGOS_257]
MIEDLIEKAKQYKIALGLGLLGAIAAGFILLQGRDQGGTDVQQLTEQTSSSSSYMNEKSNKSNEISQTETEDQLVTVDVK
GAVKKPGVYQLQSNSRVHDALEKAGGLTDEADLKSVNQAQKLSDEAVVYVAKVGENAVDVTASAPASATSGTNQTKSALV
NLNTATEADFQTISGIGQKRAQDIIAYREANGRFKSVDDLKNVSGIGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=223199 A6J85_RS06595 WP_082307453.1 1317804..1318469(+) (comEA/celA/cilE) [Streptococcus gordonii strain FDAARGOS_257]
ATGATAGAAGATTTGATAGAAAAAGCAAAGCAATATAAAATTGCTCTAGGTCTTGGTCTATTAGGAGCGATTGCAGCAGG
CTTTATTTTACTACAGGGAAGAGATCAAGGGGGGACAGATGTTCAGCAATTGACAGAGCAAACTTCTTCCTCTAGTTCAT
ATATGAATGAAAAAAGTAACAAGAGTAATGAGATCAGTCAAACCGAGACAGAAGATCAGTTGGTTACAGTTGATGTCAAG
GGTGCGGTAAAAAAGCCTGGTGTCTATCAGTTGCAGTCTAATAGTCGGGTTCATGATGCTTTAGAAAAGGCAGGTGGTTT
AACTGACGAAGCTGACTTAAAATCCGTCAATCAGGCTCAGAAACTGAGCGACGAGGCGGTAGTATATGTAGCCAAGGTCG
GAGAAAATGCTGTAGATGTTACGGCGAGTGCCCCTGCAAGTGCAACATCAGGAACAAATCAGACAAAATCCGCCCTGGTC
AATCTTAATACAGCAACAGAAGCAGACTTTCAAACTATTTCTGGTATCGGGCAAAAACGAGCACAGGATATTATTGCTTA
TCGAGAAGCCAATGGCAGATTTAAGTCTGTAGATGATCTGAAAAATGTATCAGGTATTGGGGCCAAAACTCTAGAAAAAT
TAAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(158-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.679

100

0.507
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50

99.548

0.498
  comEA/celA/cilE Streptococcus mitis SK321

49.321

100

0.493
  comEA/celA/cilE Streptococcus pneumoniae R6

48.636

99.548

0.484
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.636

99.548

0.484
  comEA/celA/cilE Streptococcus pneumoniae D39

48.636

99.548

0.484
  comEA Latilactobacillus sakei subsp. sakei 23K

35.51

100

0.394
  comEA Streptococcus thermophilus LMD-9

57.432

66.968

0.385
  comEA Bacillus subtilis subsp. subtilis str. 168

38.679

95.928

0.371

Multiple sequence alignment