Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BVH74_RS06720 Genome accession   NZ_CP020100
Coordinates   1452016..1454142 (+) Length   708 a.a.
NCBI ID   WP_080051648.1    Uniprot ID   A0A1V0BA34
Organism   Halopseudomonas phragmitis strain S-6-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447016..1459142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH74_RS06700 (BVH74_06700) pilM 1449161..1450225 (+) 1065 WP_080049313.1 pilus assembly protein PilM Machinery gene
  BVH74_RS06705 (BVH74_06705) - 1450225..1450803 (+) 579 WP_080049314.1 PilN domain-containing protein -
  BVH74_RS06710 (BVH74_06710) - 1450800..1451429 (+) 630 WP_080049315.1 type 4a pilus biogenesis protein PilO -
  BVH74_RS06715 (BVH74_06715) - 1451432..1451956 (+) 525 WP_080051647.1 pilus assembly protein PilP -
  BVH74_RS06720 (BVH74_06720) pilQ 1452016..1454142 (+) 2127 WP_080051648.1 type IV pilus secretin PilQ Machinery gene
  BVH74_RS06725 (BVH74_06725) aroK 1454148..1454666 (+) 519 WP_080049316.1 shikimate kinase AroK -
  BVH74_RS06730 (BVH74_06730) aroB 1454748..1455827 (+) 1080 WP_080049317.1 3-dehydroquinate synthase -
  BVH74_RS06735 (BVH74_06735) - 1455845..1457299 (+) 1455 WP_165443766.1 AAA family ATPase -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76614.54 Da        Isoelectric Point: 4.6562

>NTDB_id=221087 BVH74_RS06720 WP_080051648.1 1452016..1454142(+) (pilQ) [Halopseudomonas phragmitis strain S-6-2]
MPLTRKFSLAAVLALLSPLALAANLQNLDVAALPGDRVELKLSFDEPLSDAPRGYTIDQPARIALDLPGVKNQLGQRSRE
LGLGNARSVNVVEANDRTRLIINLTNLVPYNTRIDGNHLYVLVGAQSAPGYSAAPASTASAPAASPSWRDAGQPAVSAPA
AGGRAITSLDFQRGEQGEGNVIIDLSDASIRVDVQEQGGRVRLNFPDTRLPDPLRVRLDVKDFATPVNFINASSTSSGAS
ISIEPSGYYEHLTYQADNRLIVSFKPLTRAEADQRRADAFTYTGEKLSLNFQDIEVRSVLQLIADFTDLNLVASDTVQGS
ITLRLQNVPWDQALDLVLKTKGLDQRRIGNVLLVAPADEIAARERQELESQRQIAELAPLRRELIQVNYAKAADIAKLFA
SVTANDSGQQRGSITVDDRTNSIIAMETQDKLDELRRIVTQLDIPVRQVMIEARIVEANVGFDKALGVRWGGNVWMGDRF
TVFGKDGESGVDDDEDASTARFQGRRTLPVNTPFVDLGVLNSTSGIGIGFLTNNAILDLQLSAMESTGNGEVISQPKVVT
SDKETAKILKGSEIPYQEASSSGATTTAFAEAVLSLEVTPQITPDNQVIMDVVVTKDEPDFTNTVNGVPTIRKNEVNAKI
LVADGETIVIGGVFASETQRGQEKVPFLGDLPVLGRMFRRDISIDNKTELLIFLTPRIINNGAISLAR

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=221087 BVH74_RS06720 WP_080051648.1 1452016..1454142(+) (pilQ) [Halopseudomonas phragmitis strain S-6-2]
ATGCCTCTAACCAGGAAGTTTTCCCTCGCTGCAGTCCTAGCGCTGCTCAGTCCCCTGGCCTTGGCGGCCAACCTGCAGAA
CCTGGATGTTGCCGCATTGCCGGGTGATCGGGTCGAACTCAAACTGTCATTTGACGAGCCGCTGAGCGATGCTCCGCGTG
GCTACACCATCGACCAGCCAGCCCGGATCGCTCTGGATCTGCCTGGAGTAAAAAACCAACTAGGGCAGCGCAGCCGGGAG
CTCGGGCTGGGCAATGCTCGCAGCGTCAACGTAGTTGAGGCCAATGATCGCACCCGCCTGATCATCAATCTGACCAATCT
GGTGCCGTACAACACTCGGATCGATGGCAACCACCTTTATGTGCTGGTCGGTGCGCAAAGTGCGCCAGGCTACAGTGCTG
CTCCGGCCTCGACCGCCTCGGCTCCGGCCGCCAGTCCCAGTTGGCGTGACGCCGGCCAGCCGGCGGTCAGTGCTCCGGCT
GCCGGTGGTCGGGCGATCACCAGTCTGGACTTTCAGCGTGGTGAGCAGGGCGAAGGTAATGTGATCATTGATCTGTCCGA
CGCCTCGATCCGGGTTGATGTTCAGGAGCAGGGCGGCCGGGTTCGTCTGAACTTCCCCGATACCCGCCTGCCTGACCCGC
TGCGTGTTCGTCTGGATGTTAAGGACTTCGCAACGCCGGTGAATTTCATCAACGCCAGCAGCACCAGCTCCGGGGCCAGT
ATCAGCATTGAGCCGAGCGGCTACTACGAGCACCTGACCTATCAGGCCGACAATCGTCTGATCGTCAGCTTCAAGCCCCT
GACTCGGGCCGAAGCCGATCAGCGCCGCGCCGATGCCTTTACCTACACCGGTGAAAAACTGTCGCTGAACTTCCAGGATA
TCGAAGTGCGCTCGGTGCTGCAGTTGATTGCCGATTTCACCGACCTCAATCTGGTGGCCAGTGACACCGTACAGGGCAGC
ATTACCCTGCGCCTGCAGAATGTGCCCTGGGATCAGGCTCTGGATCTGGTGCTCAAGACCAAGGGGCTGGATCAGCGCCG
AATTGGCAACGTGCTGCTGGTCGCGCCGGCAGATGAAATCGCCGCCCGTGAGCGTCAGGAACTGGAGTCTCAGCGCCAGA
TCGCGGAACTGGCTCCGCTGCGTCGTGAGCTGATTCAGGTCAACTATGCCAAGGCGGCCGATATCGCCAAGCTGTTCGCC
TCGGTTACGGCTAATGACAGTGGCCAGCAGCGTGGTTCGATCACGGTGGATGACCGTACCAACAGCATCATTGCAATGGA
AACCCAGGACAAGTTGGACGAGTTGCGCCGTATCGTTACCCAATTGGACATTCCGGTACGCCAGGTCATGATCGAGGCGC
GGATTGTTGAGGCCAATGTCGGTTTCGACAAGGCGCTCGGGGTGCGCTGGGGTGGTAACGTCTGGATGGGTGACCGCTTC
ACAGTATTTGGCAAGGACGGCGAAAGCGGTGTGGATGATGACGAAGATGCTTCGACTGCACGATTCCAAGGGCGGCGGAC
GCTGCCTGTTAACACCCCGTTCGTCGATCTGGGTGTGCTGAACTCCACTTCCGGTATCGGTATCGGCTTCCTGACCAATA
ACGCGATCCTCGATCTGCAGTTGTCGGCGATGGAAAGTACCGGTAACGGTGAGGTCATTTCCCAGCCCAAGGTGGTAACC
TCGGACAAGGAAACCGCCAAGATCCTCAAGGGTTCCGAAATTCCCTATCAGGAAGCCAGCTCCAGCGGTGCCACTACTAC
CGCCTTCGCTGAAGCCGTACTGTCGCTGGAGGTGACTCCGCAGATCACTCCCGACAATCAGGTAATCATGGACGTGGTGG
TTACCAAGGACGAGCCGGACTTCACCAATACCGTTAATGGTGTTCCGACCATCCGCAAGAACGAGGTCAATGCCAAGATC
CTGGTGGCCGATGGCGAAACCATCGTGATCGGCGGAGTATTTGCCAGTGAGACCCAGCGTGGTCAGGAGAAGGTACCGTT
CCTGGGCGATCTGCCTGTGTTGGGCAGAATGTTCCGCCGCGACATTTCGATCGACAACAAGACCGAACTGTTGATCTTCC
TGACACCGCGTATTATCAATAACGGGGCTATCTCACTTGCCAGGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(543-699)

Secretin and TonB N terminus short domain (STN)

(310-356)

Bacterial type II/III secretion system short domain (Secretin_N)

(384-448)

AMIN domain (AMIN)

(41-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0BA34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

69.188

100

0.698
  pilQ Acinetobacter baumannii D1279779

39.68

100

0.421
  pilQ Acinetobacter baumannii strain A118

39.547

100

0.419
  comQ Acinetobacter baylyi ADP1

39.945

100

0.412
  pilQ Legionella pneumophila strain Lp02

38.905

98.023

0.381
  pilQ Legionella pneumophila strain ERS1305867

39.181

96.61

0.379

Multiple sequence alignment