Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GTHT12_RS06710 Genome accession   NZ_CP020030
Coordinates   1312989..1314233 (+) Length   414 a.a.
NCBI ID   WP_008878510.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain T12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1307989..1319233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTHT12_RS06680 (GTHT12_00715) - 1308086..1309375 (+) 1290 WP_008878516.1 pitrilysin family protein -
  GTHT12_RS06685 (GTHT12_00716) - 1309433..1310149 (+) 717 WP_029760492.1 SDR family oxidoreductase -
  GTHT12_RS06690 (GTHT12_00717) - 1310213..1310461 (+) 249 WP_008878514.1 DUF3243 domain-containing protein -
  GTHT12_RS06695 (GTHT12_00718) - 1310590..1311381 (+) 792 WP_008878513.1 DUF3388 domain-containing protein -
  GTHT12_RS06700 (GTHT12_00719) - 1311406..1312305 (+) 900 WP_029760493.1 RodZ family helix-turn-helix domain-containing protein -
  GTHT12_RS06705 (GTHT12_00720) pgsA 1312386..1312964 (+) 579 WP_008878511.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GTHT12_RS06710 (GTHT12_00721) cinA 1312989..1314233 (+) 1245 WP_008878510.1 competence/damage-inducible protein A Machinery gene
  GTHT12_RS06715 (GTHT12_00722) recA 1314414..1315454 (+) 1041 WP_008878509.1 recombinase RecA Machinery gene
  GTHT12_RS06720 (GTHT12_00723) rny 1315971..1317527 (+) 1557 WP_008878508.1 ribonuclease Y -
  GTHT12_RS06725 (GTHT12_00724) - 1317637..1318431 (+) 795 WP_029760496.1 TIGR00282 family metallophosphoesterase -
  GTHT12_RS06730 (GTHT12_00725) spoVS 1318562..1318822 (+) 261 WP_008878506.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44664.15 Da        Isoelectric Point: 6.0775

>NTDB_id=220524 GTHT12_RS06710 WP_008878510.1 1312989..1314233(+) (cinA) [Geobacillus thermodenitrificans strain T12]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTVVGDNAARLEQAVNVAQTRADLIIFTGGLGPTKDDLTKET
IARLLGRRLVTDEEALRAIEAYFVRTNRPMTENNKKQALILEGSTVLKNEHGMAPGMALSVNGITYMLLPGPPKEMRPMF
TKYGTAFLRGAFSLAERIESRVLRFFGIGESALETAVADLIDAQSNPTIAPLAGDGEVTLRLTAKHRDQAEAKRLLDETE
AAILARVGRYCYGYNNETLFTKTIERLKERGWTIAAAESLTGGLFLEQLTAIPGASAVVQGGGVCYTNDVKERMLGVPRA
LLETDGAVSESCARLLAENVRTMCSADVGISFTGVAGPDPLEGHPPGTVYVGVAVRGRDTTVHRLTLSGTRDNIRVRTAK
YGCFFLLQMLAASD

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=220524 GTHT12_RS06710 WP_008878510.1 1312989..1314233(+) (cinA) [Geobacillus thermodenitrificans strain T12]
TTGAATGCGGAAATCATTGCTGTTGGCTCCGAGCTGTTGCTCGGACAAATTGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTCGCTGAACTTGGAATTAACGTTTATTTCCATACAGTCGTCGGCGACAATGCAGCCCGTCTCGAACAAGCCGTCA
ATGTTGCCCAGACGAGGGCTGACTTGATCATTTTTACAGGTGGACTTGGACCGACAAAGGACGATTTGACGAAAGAGACG
ATCGCCCGTCTGCTCGGCCGCCGGCTTGTCACTGATGAGGAAGCACTACGGGCGATTGAAGCATATTTTGTCCGCACGAA
CCGGCCAATGACAGAAAACAACAAAAAGCAGGCGCTCATCTTGGAAGGATCGACAGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTTCGGTCAATGGCATTACATATATGCTGCTGCCTGGGCCGCCGAAAGAAATGCGTCCGATGTTT
ACAAAATACGGAACCGCCTTTTTGCGTGGGGCGTTTTCGCTTGCGGAGCGCATCGAATCGCGCGTGCTTCGTTTTTTTGG
CATCGGCGAATCGGCGCTTGAGACAGCGGTTGCTGATTTGATTGACGCCCAGTCCAATCCGACGATCGCCCCGCTGGCTG
GCGACGGCGAAGTGACGCTTCGTCTGACGGCAAAACATCGGGATCAGGCGGAGGCGAAGCGGCTGCTTGATGAAACGGAA
GCGGCCATTTTGGCGCGCGTCGGCCGCTATTGTTACGGATATAACAACGAAACGCTGTTTACGAAAACGATCGAACGGTT
AAAAGAAAGAGGGTGGACGATCGCTGCGGCTGAGAGCCTGACCGGCGGGCTGTTTCTCGAACAGCTGACAGCCATCCCTG
GTGCATCGGCAGTGGTGCAAGGCGGCGGCGTCTGCTACACAAACGACGTGAAAGAAAGGATGCTTGGCGTGCCGCGGGCG
CTGTTAGAGACGGACGGGGCGGTCAGCGAATCGTGCGCTCGCTTGCTTGCCGAAAACGTCCGGACGATGTGCAGCGCTGA
TGTTGGCATCAGCTTTACCGGCGTTGCTGGTCCTGATCCGCTTGAAGGCCATCCGCCCGGCACCGTTTATGTTGGCGTTG
CTGTCCGCGGGCGCGACACAACTGTCCACCGCCTCACTTTATCCGGCACGCGCGATAACATTCGTGTCCGCACCGCCAAA
TACGGTTGTTTCTTTTTGCTCCAGATGCTTGCGGCCAGCGATTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.413

98.792

0.587
  cinA Streptococcus pneumoniae TIGR4

48.349

100

0.495
  cinA Streptococcus mitis SK321

48.349

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.493
  cinA Streptococcus pneumoniae R6

48.113

100

0.493
  cinA Streptococcus pneumoniae D39

47.877

100

0.49
  cinA Streptococcus mitis NCTC 12261

47.642

100

0.488
  cinA Streptococcus mutans UA159

47.619

96.377

0.459
  cinA Streptococcus suis isolate S10

43.122

91.304

0.394

Multiple sequence alignment