Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CPS_RS19935 Genome accession   NC_003910
Coordinates   4685644..4686903 (+) Length   419 a.a.
NCBI ID   WP_011045177.1    Uniprot ID   Q47VS6
Organism   Colwellia psychrerythraea 34H     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4680644..4691903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPS_RS19915 (CPS_4444) - 4681376..4681858 (+) 483 WP_011045173.1 pilin -
  CPS_RS23035 (CPS_4445) - 4681986..4682684 (+) 699 WP_049757942.1 hypothetical protein -
  CPS_RS19925 (CPS_4446) - 4682776..4683486 (-) 711 WP_011045175.1 transposase -
  CPS_RS19930 (CPS_4447) pilB 4683825..4685525 (+) 1701 WP_011045176.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CPS_RS19935 (CPS_4448) pilC 4685644..4686903 (+) 1260 WP_011045177.1 type II secretion system F family protein Machinery gene
  CPS_RS19940 (CPS_4449) pilD 4687011..4687916 (+) 906 WP_011045178.1 prepilin peptidase Machinery gene
  CPS_RS19945 (CPS_4450) coaE 4688234..4688842 (+) 609 WP_011045179.1 dephospho-CoA kinase -
  CPS_RS19950 (CPS_4451) zapD 4688903..4689655 (+) 753 WP_011045180.1 cell division protein ZapD -
  CPS_RS19955 (CPS_4452) yacG 4689764..4690000 (+) 237 WP_011045181.1 DNA gyrase inhibitor YacG -
  CPS_RS19960 (CPS_4453) mutT 4690027..4690461 (-) 435 WP_011045182.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45714.07 Da        Isoelectric Point: 9.6491

>NTDB_id=22023 CPS_RS19935 WP_011045177.1 4685644..4686903(+) (pilC) [Colwellia psychrerythraea 34H]
MAITTKKKSAKDRTKVKEQDVFVWHGVNRKGKKISGELSAKSIIELKNQLRKQGIVPSRVKKKAKPLFGLGSGDKAITPM
DIAVITRQIATMLGAGVPLVQTIEMIGKGHNNGKMRMLLGDIATKLSSGIPLSDCLRDHPLYFDDLYCDLVASGEQSGAL
ETIYDRIATYKEKGEALKSKIKKAMTYPIAVLVVAFIVTSILLIFVVPVFQEIFASFGAELPAFTLMVIAISEFMQAYWY
FGLAGLYLAFFLFKRAHRNNQKLRDKVDKNILKLPVIGDLLEKAAVARYARTLSTTFAAGVPLIDALESAAGASGNAVFR
DAILEVRAEVSSGMQMNLAMRNCKIFPDMVIQMVAIGEESGAVDDMLSKVANVYEQQVDDAVDGLTALLEPMIMAVLGVV
IGGLIIAMYLPIFEIGKIV

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=22023 CPS_RS19935 WP_011045177.1 4685644..4686903(+) (pilC) [Colwellia psychrerythraea 34H]
ATGGCTATCACAACAAAAAAAAAATCAGCTAAAGATAGAACTAAAGTTAAAGAGCAAGATGTCTTTGTTTGGCATGGGGT
TAACCGTAAAGGAAAAAAAATTAGTGGTGAACTTTCTGCTAAGAGTATTATTGAGCTAAAAAATCAGCTGCGTAAACAAG
GCATAGTACCAAGTCGTGTTAAGAAAAAAGCTAAACCATTATTTGGTTTAGGTAGCGGAGATAAAGCAATAACTCCTATG
GACATTGCTGTTATTACCAGACAAATAGCCACTATGTTAGGTGCTGGTGTTCCGCTAGTTCAGACTATTGAAATGATAGG
CAAGGGGCATAATAACGGTAAGATGCGCATGCTTCTTGGAGATATCGCCACTAAACTTTCTTCTGGTATCCCTTTATCAG
ACTGTTTACGTGATCACCCACTCTATTTCGATGACCTTTATTGTGATTTAGTCGCCTCTGGGGAGCAATCAGGTGCACTA
GAAACTATTTACGACCGTATTGCTACCTACAAAGAAAAAGGTGAAGCATTAAAAAGTAAAATTAAAAAAGCCATGACTTA
CCCTATTGCGGTGTTAGTGGTTGCCTTTATCGTAACATCAATACTGCTTATCTTTGTGGTACCTGTTTTCCAGGAGATAT
TTGCCAGTTTTGGCGCTGAACTCCCTGCTTTTACCCTAATGGTGATTGCTATTTCTGAATTTATGCAGGCCTATTGGTAC
TTTGGTTTAGCTGGACTTTATTTAGCATTTTTCTTATTTAAACGTGCCCACAGAAATAACCAAAAATTACGAGATAAGGT
TGATAAAAACATACTAAAATTACCTGTTATTGGAGATTTATTAGAGAAAGCAGCCGTTGCTCGCTACGCGAGAACATTAT
CAACGACTTTTGCTGCAGGTGTTCCTTTAATTGATGCACTAGAGTCAGCCGCAGGTGCATCAGGCAATGCCGTATTCCGT
GATGCAATATTAGAAGTACGCGCTGAGGTGTCTTCGGGAATGCAAATGAATTTAGCTATGCGTAACTGTAAAATATTCCC
AGATATGGTTATACAAATGGTGGCTATTGGTGAAGAGTCTGGTGCTGTAGATGATATGTTATCAAAAGTAGCTAATGTAT
ACGAACAGCAAGTTGATGATGCTGTTGATGGTTTAACCGCACTGTTGGAGCCGATGATTATGGCCGTATTAGGTGTCGTT
ATTGGTGGTTTAATTATTGCTATGTACTTACCAATATTTGAAATCGGTAAGATTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-411)

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q47VS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.481

96.659

0.594
  pilC Acinetobacter baumannii D1279779

53.58

96.659

0.518
  pilC Acinetobacter baylyi ADP1

52.84

96.659

0.511
  pilC Legionella pneumophila strain ERS1305867

53.117

95.704

0.508
  pilC Vibrio cholerae strain A1552

44.416

94.033

0.418
  pilG Neisseria meningitidis 44/76-A

42.506

97.136

0.413
  pilG Neisseria gonorrhoeae MS11

42.26

97.136

0.41
  pilC Vibrio campbellii strain DS40M4

41.919

94.511

0.396

Multiple sequence alignment