Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A9237_RS08110 Genome accession   NZ_CP019959
Coordinates   1795474..1796583 (-) Length   369 a.a.
NCBI ID   WP_078608012.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1790474..1801583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS08080 (A9237_08080) hemF 1791002..1791919 (-) 918 WP_078608010.1 oxygen-dependent coproporphyrinogen oxidase -
  A9237_RS08085 (A9237_08085) - 1791954..1792511 (-) 558 WP_045416825.1 L-threonylcarbamoyladenylate synthase -
  A9237_RS08090 (A9237_08090) purE 1792712..1793197 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  A9237_RS08095 (A9237_08095) - 1793202..1794335 (+) 1134 WP_078608011.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  A9237_RS08100 (A9237_08100) - 1794400..1794969 (-) 570 WP_009708006.1 type I DNA topoisomerase -
  A9237_RS08105 (A9237_08105) - 1794992..1795471 (-) 480 WP_005429833.1 DUF494 family protein -
  A9237_RS08110 (A9237_08110) dprA 1795474..1796583 (-) 1110 WP_078608012.1 DNA-processing protein DprA Machinery gene
  A9237_RS08115 (A9237_08115) - 1796567..1797661 (-) 1095 WP_078608013.1 LysM peptidoglycan-binding domain-containing protein -
  A9237_RS08120 (A9237_08120) def 1797800..1798318 (+) 519 WP_033006323.1 peptide deformylase -
  A9237_RS08125 (A9237_08125) fmt 1798352..1799299 (+) 948 WP_038896195.1 methionyl-tRNA formyltransferase -
  A9237_RS08130 (A9237_08130) rsmB 1799382..1800665 (+) 1284 WP_020196736.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39422.11 Da        Isoelectric Point: 6.2306

>NTDB_id=219186 A9237_RS08110 WP_078608012.1 1795474..1796583(-) (dprA) [Vibrio owensii strain XSBZ03]
MKPRNDTDLAAWLKLSCLPGIGGVKLSKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWAAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGDASCLSQPQIAMVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=219186 A9237_RS08110 WP_078608012.1 1795474..1796583(-) (dprA) [Vibrio owensii strain XSBZ03]
ATGAAACCACGCAATGATACGGATCTCGCTGCCTGGCTAAAGCTGAGTTGTTTGCCAGGCATTGGCGGGGTCAAGCTGAG
TAAGCTACTGAGCAAAGACACGCCGAGTAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTGGGCTTAACGGCAA
AACAACTGCAAGCGTGGTCACAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGCTGCAGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTACCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTATTATTCGTAAAGGG
AGACGCGAGCTGCTTGTCTCAGCCACAAATAGCCATGGTTGGCAGTCGTAATGCCAGCGTGGATGGACTACAACATGCAA
GAAGCTTTGCATCAGACTTGGTACAACACGATCTGATCGTCACCAGTGGTTTAGCATTAGGTATTGATGGTCATGCTCAT
GATGGCGCGCTTTTAGCTGGCGGTAAAACCATCGCAGTGCTTGGTTCTGGGTTGGAACAAGTGTACCCAGCAAGACACCG
AGGTTTAGCGCAGCGAGTGATGGAAAATGGTGCGCTTGTCTCTGAGTTTCGTCCTGATGCTAAACCTCGCGCAGAAAACT
TCCCACGTCGTAATCGAATTATCAGTGGTTTGTCGCTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGTTCCTTA
ATCACTGCTCGCTATGCCCTTGAGCAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCTCCTAACGCCAGTGG
TGGTAATCAATTGATTCGTAACGGGGCTTGCCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTACTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

96.748

100

0.967
  dprA Vibrio cholerae strain A1552

58.919

100

0.591
  dprA Glaesserella parasuis strain SC1401

47.733

100

0.485
  dprA Legionella pneumophila strain ERS1305867

46.201

89.16

0.412
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Neisseria meningitidis strain C311

37.084

100

0.393
  dprA Neisseria meningitidis MC58

37.084

100

0.393
  dprA Neisseria gonorrhoeae MS11

36.176

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.377

Multiple sequence alignment