Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   B1H58_RS05125 Genome accession   NZ_CP019706
Coordinates   1101010..1102443 (+) Length   477 a.a.
NCBI ID   WP_085068333.1    Uniprot ID   A0A1W6B2Y9
Organism   Pantoea alhagi strain LTYR-11Z     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096010..1107443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1H58_RS05095 (B1H58_05140) - 1096567..1097547 (+) 981 WP_085068319.1 calcium/sodium antiporter -
  B1H58_RS05100 (B1H58_05145) kdsD 1097562..1098548 (+) 987 WP_085068322.1 arabinose-5-phosphate isomerase KdsD -
  B1H58_RS05105 (B1H58_05150) kdsC 1098566..1099132 (+) 567 WP_085068325.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  B1H58_RS05110 (B1H58_05155) lptC 1099129..1099704 (+) 576 WP_085068328.1 LPS export ABC transporter periplasmic protein LptC -
  B1H58_RS05115 (B1H58_05160) lptA 1099685..1100230 (+) 546 WP_418304148.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  B1H58_RS05120 (B1H58_05165) lptB 1100236..1100961 (+) 726 WP_085068332.1 LPS export ABC transporter ATP-binding protein -
  B1H58_RS05125 (B1H58_05170) rpoN/rpoN1 1101010..1102443 (+) 1434 WP_085068333.1 RNA polymerase factor sigma-54 Machinery gene
  B1H58_RS05130 (B1H58_05175) hpf 1102467..1102754 (+) 288 WP_085068335.1 ribosome hibernation promoting factor -
  B1H58_RS05135 (B1H58_05180) ptsN 1102946..1103428 (+) 483 WP_208615348.1 PTS IIA-like nitrogen regulatory protein PtsN -
  B1H58_RS05140 (B1H58_05185) rapZ 1103499..1104353 (+) 855 WP_085068339.1 RNase adapter RapZ -
  B1H58_RS05145 (B1H58_05190) npr 1104350..1104622 (+) 273 WP_085068341.1 PTS phosphocarrier protein NPr -
  B1H58_RS05150 (B1H58_05195) mtgA 1104631..1105317 (-) 687 WP_237172453.1 monofunctional biosynthetic peptidoglycan transglycosylase -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53872.70 Da        Isoelectric Point: 4.3907

>NTDB_id=217971 B1H58_RS05125 WP_085068333.1 1101010..1102443(+) (rpoN/rpoN1) [Pantoea alhagi strain LTYR-11Z]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDIHEEVDSLEYAESEALDTREALEQKDMPE
ELPLDATWDEIYTAGTPSGTGNDYRDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAIDDTGYLTVTLDD
IRDSLGDEDVALDEVEAVLKRVQRFDPVGVGARNLRDCLLVQLSQFARDTPFLAEAQLIVDQYLDLLANHDFRSLMRVTR
LKEEVLKTALALIQSLDPRPGQSVNTREPEYVIPDVLVRKTGNRWTVELNSDSVPRLQINQQYAALGNSARSDSDNQFIR
TNLQDAKWLIKSLESRNDTLLKVTRCIVEQQQAFFEQGEEFMRPMVLADIAQAVDMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLISAENPAKPLSDSKLTTLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=217971 B1H58_RS05125 WP_085068333.1 1101010..1102443(+) (rpoN/rpoN1) [Pantoea alhagi strain LTYR-11Z]
ATGAAGCAAGGTTTGCAACTCAGACTCAGTCAACAGCTTGCAATGACTCCGCAGCTACAGCAGGCAATCCGTTTGCTGCA
GCTTTCTACGCTGGAACTTCAACAGGAGATACAGCTGGCGCTGGAGAGTAATCCGTTGCTTGAGCAGACCGATATCCATG
AGGAAGTAGATTCTCTCGAATATGCTGAAAGCGAAGCGCTTGATACGCGTGAGGCGCTTGAGCAAAAGGATATGCCGGAA
GAGTTGCCGCTTGATGCAACCTGGGATGAGATCTATACGGCCGGTACGCCCTCAGGCACCGGCAATGACTATCGCGATGA
TGAACTACCGGTTTATCAGGGCGAAACCACCCAAACCTTGCAGGATTACCTGATGTGGCAGGTAGAGCTAACGCCGTTTA
GCGATACCGACCGCGCGATTGCCACCTCGATCGTCGATGCCATTGACGATACCGGCTACCTTACCGTTACGCTGGATGAT
ATCCGCGACAGCCTTGGCGACGAGGATGTGGCGCTGGATGAGGTTGAAGCGGTTCTGAAGCGAGTCCAGCGTTTCGATCC
GGTTGGGGTGGGCGCACGTAACCTGCGTGATTGTCTGCTGGTACAGCTTTCACAATTTGCGCGCGATACGCCCTTTCTGG
CCGAGGCGCAGCTGATTGTCGATCAATACCTCGATCTGCTGGCCAACCATGATTTCCGCAGTCTGATGCGCGTGACGCGT
TTGAAAGAAGAAGTGCTGAAAACGGCGCTGGCGCTGATTCAGTCACTGGATCCACGACCCGGCCAGTCAGTTAACACCCG
CGAACCGGAATATGTCATCCCTGATGTGCTGGTGCGTAAAACAGGCAATCGCTGGACGGTTGAGTTAAACAGCGACAGCG
TGCCGCGCCTGCAGATCAATCAGCAATACGCCGCGCTGGGCAATTCGGCGCGTAGCGACAGCGATAACCAGTTTATTCGC
ACCAATTTACAGGATGCGAAATGGCTGATTAAAAGCCTGGAAAGCCGTAATGATACGCTGCTCAAAGTGACGCGTTGCAT
TGTGGAACAACAGCAGGCTTTTTTTGAGCAGGGTGAAGAGTTTATGCGCCCGATGGTGCTGGCGGATATTGCCCAGGCCG
TTGATATGCATGAGTCGACCATTTCCCGCGTTACCACTCAAAAATATCTGCACAGCCCACGCGGCATTTTTGAACTGAAA
TACTTTTTTTCCAGCCATGTTAATACCGAAGGCGGGGGCGAAGCCTCATCAACTGCCATTCGCGCGCTGGTGAAAAAGCT
AATCTCGGCGGAAAACCCCGCCAAACCGCTGAGCGACAGCAAGCTCACTACCCTGTTGTCTGAACAAGGCATTATGGTGG
CGCGCCGTACCGTCGCGAAGTATCGCGAGTCTTTATCCATCCCGCCATCAAACCAGCGTAAGCAATTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6B2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.924

100

0.484

Multiple sequence alignment