Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PspS19_RS23430 Genome accession   NZ_CP019397
Coordinates   5258968..5260185 (+) Length   405 a.a.
NCBI ID   WP_159998015.1    Uniprot ID   -
Organism   Pseudomonas sp. S19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5253968..5265185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS19_RS23415 (PspS19_24030) - 5254614..5257562 (+) 2949 WP_159998013.1 DUF748 domain-containing protein -
  PspS19_RS23420 (PspS19_24035) - 5257735..5258091 (-) 357 WP_095166553.1 BON domain-containing protein -
  PspS19_RS23425 (PspS19_24040) - 5258285..5258701 (-) 417 WP_095166551.1 pilin -
  PspS19_RS23430 (PspS19_24045) pilC 5258968..5260185 (+) 1218 WP_159998015.1 type II secretion system F family protein Machinery gene
  PspS19_RS23435 (PspS19_24050) pilD 5260188..5261060 (+) 873 WP_159998017.1 A24 family peptidase Machinery gene
  PspS19_RS23440 (PspS19_24055) coaE 5261057..5261680 (+) 624 WP_159998019.1 dephospho-CoA kinase -
  PspS19_RS23445 (PspS19_24060) yacG 5261677..5261877 (+) 201 WP_095166544.1 DNA gyrase inhibitor YacG -
  PspS19_RS23450 (PspS19_24065) - 5261874..5262089 (-) 216 WP_095166542.1 hypothetical protein -
  PspS19_RS23455 (PspS19_24070) - 5262153..5262839 (-) 687 WP_095166540.1 energy-coupling factor ABC transporter permease -
  PspS19_RS23460 (PspS19_24075) - 5263070..5263309 (+) 240 WP_159998021.1 DUF2790 domain-containing protein -
  PspS19_RS23465 (PspS19_24080) - 5263304..5264572 (-) 1269 WP_159998023.1 OprD family porin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44079.74 Da        Isoelectric Point: 10.2207

>NTDB_id=215163 PspS19_RS23430 WP_159998015.1 5258968..5260185(+) (pilC) [Pseudomonas sp. S19]
MAVKAAKVSLYAWQGTDRTGRKMSGESSAQTPALIKAQLRQRGIIPGKVRKKFAPLFSAGQRVTAQDIALFTRQMATMLK
AGVPLLQAFDIIAEGFDNPRMRGLLEDLRQDVMAGSSLTTALRKKPQHFDELYCNLIDAGEQAGALDTLLERVASYREKT
QRLKARVRKAMTYPLAVLLVAVIVSAILLLKVVPQFEVMFQGFGAELPALTRGVIGLAEFLRHSGWLLLGGLLAAALGVH
QTQRRSPRFRDWLQTRWLDLPVVGPLLRKSAVARYARTLSTTFAAGVPLLEALNSVAGATGNRVFKQAVLAIREDVCSGM
QLHVAMRNSGVFPNLAIQMTAIGEESGALDDMLGNVASYYEDEVETLVDHLTSLLEPLIMAVLGVIVGGLVIAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=215163 PspS19_RS23430 WP_159998015.1 5258968..5260185(+) (pilC) [Pseudomonas sp. S19]
ATGGCGGTCAAAGCAGCAAAGGTCAGCCTGTACGCCTGGCAAGGCACCGATAGAACAGGCCGCAAAATGTCCGGCGAATC
GAGCGCGCAGACTCCGGCCCTGATCAAGGCCCAGTTGCGCCAGCGCGGCATCATCCCGGGCAAGGTACGCAAAAAATTCG
CCCCCCTGTTCAGCGCTGGCCAACGGGTTACTGCCCAGGATATCGCGCTCTTCACTAGGCAAATGGCGACCATGCTCAAG
GCCGGTGTGCCGCTGCTGCAGGCCTTCGACATCATCGCCGAAGGCTTCGACAACCCACGCATGCGGGGCCTGCTGGAGGA
CTTGAGACAGGACGTGATGGCCGGCAGCAGCCTGACCACCGCCCTGCGCAAAAAGCCGCAACACTTCGACGAGCTCTACT
GCAACCTGATTGACGCCGGCGAGCAGGCCGGCGCCCTCGACACCTTGCTGGAGCGGGTGGCGAGTTACCGGGAAAAAACT
CAACGGCTCAAGGCGCGGGTGCGTAAAGCCATGACCTACCCGCTGGCGGTGCTCCTGGTCGCGGTGATCGTCAGCGCTAT
CCTGTTGCTCAAGGTGGTGCCGCAGTTCGAAGTGATGTTCCAGGGTTTTGGTGCCGAGCTTCCGGCACTGACCCGCGGTG
TGATCGGGCTTGCCGAATTCCTCCGGCACAGCGGCTGGCTGCTGCTAGGTGGGCTGCTCGCTGCCGCGTTGGGGGTGCAC
CAGACCCAACGCCGCTCCCCGAGGTTTCGCGACTGGCTACAGACGCGCTGGCTGGATCTGCCGGTGGTCGGCCCCCTGCT
GCGCAAGTCGGCGGTCGCCCGCTATGCGCGCACGTTATCGACTACCTTCGCCGCCGGGGTGCCGCTGCTGGAGGCTTTGA
ATTCGGTGGCCGGGGCCACGGGCAATCGGGTTTTCAAACAGGCAGTGCTGGCGATCCGCGAGGACGTGTGTAGCGGCATG
CAGTTGCATGTGGCGATGCGCAACAGCGGGGTATTTCCCAACCTGGCGATCCAGATGACCGCGATTGGCGAAGAATCTGG
GGCGCTGGACGACATGCTCGGCAACGTCGCGAGCTACTATGAAGACGAAGTCGAGACCCTGGTCGATCACCTGACCAGCC
TGCTGGAACCCCTTATCATGGCTGTACTTGGGGTAATCGTCGGCGGGCTGGTGATTGCTATGTACCTGCCCATTTTCCAA
CTTGGTACGGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.704

100

0.637
  pilC Acinetobacter baylyi ADP1

52.941

100

0.533
  pilC Acinetobacter baumannii D1279779

51.225

100

0.516
  pilC Legionella pneumophila strain ERS1305867

50.758

97.778

0.496
  pilC Vibrio campbellii strain DS40M4

41.791

99.259

0.415
  pilG Neisseria gonorrhoeae MS11

40.796

99.259

0.405
  pilG Neisseria meningitidis 44/76-A

40.547

99.259

0.402
  pilC Vibrio cholerae strain A1552

41.327

96.79

0.4
  pilC Thermus thermophilus HB27

38.75

98.765

0.383

Multiple sequence alignment