Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BWP24_RS02815 | Genome accession | NZ_CP019293 |
| Coordinates | 564695..565111 (-) | Length | 138 a.a. |
| NCBI ID | WP_045381308.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LMB29 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 559695..570111
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWP24_RS02795 (BWP24_02835) | coaE | 560195..560809 (-) | 615 | WP_045369833.1 | dephospho-CoA kinase | - |
| BWP24_RS02800 (BWP24_02840) | pilD | 560810..561679 (-) | 870 | WP_045381296.1 | A24 family peptidase | Machinery gene |
| BWP24_RS02805 (BWP24_02845) | pilC | 561752..562975 (-) | 1224 | WP_077200206.1 | type II secretion system F family protein | Machinery gene |
| BWP24_RS02810 (BWP24_02850) | pilB | 563010..564695 (-) | 1686 | WP_045421881.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BWP24_RS02815 (BWP24_02855) | pilA | 564695..565111 (-) | 417 | WP_045381308.1 | type IV pilin protein | Machinery gene |
| BWP24_RS02825 (BWP24_02865) | nadC | 565376..566263 (-) | 888 | WP_077200208.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BWP24_RS02830 (BWP24_02870) | ampD | 566356..566907 (+) | 552 | WP_077200209.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BWP24_RS02835 (BWP24_02875) | pdhR | 567312..568079 (+) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 14355.45 Da Isoelectric Point: 8.4771
>NTDB_id=214641 BWP24_RS02815 WP_045381308.1 564695..565111(-) (pilA) [Vibrio campbellii strain LMB29]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKNYVTKSEVASAVASLKSVITPAELFYQEKGTFPASEDDLASVGI
NSSSIQNGTLGFASSAIELNISSLSPAKATITRESTGWKCAVSGLTDATNAPKGCPQA
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKNYVTKSEVASAVASLKSVITPAELFYQEKGTFPASEDDLASVGI
NSSSIQNGTLGFASSAIELNISSLSPAKATITRESTGWKCAVSGLTDATNAPKGCPQA
Nucleotide
Download Length: 417 bp
>NTDB_id=214641 BWP24_RS02815 WP_045381308.1 564695..565111(-) (pilA) [Vibrio campbellii strain LMB29]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGATTATTGGTGTTTT
GTCTGCAATTGCTGTTCCTGCATATAAAAACTACGTTACAAAAAGCGAAGTTGCTTCAGCAGTTGCATCTTTAAAATCTG
TCATAACACCTGCTGAACTTTTCTATCAAGAGAAAGGAACATTCCCTGCAAGTGAAGATGACTTAGCTTCGGTTGGTATT
AATTCTAGTTCAATTCAAAATGGTACACTTGGATTCGCGTCAAGCGCTATTGAACTAAACATTAGCTCATTGAGTCCTGC
AAAAGCGACGATTACAAGAGAGAGCACCGGGTGGAAGTGCGCTGTCTCAGGTTTGACAGACGCAACAAATGCTCCTAAGG
GCTGTCCTCAAGCATAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGATTATTGGTGTTTT
GTCTGCAATTGCTGTTCCTGCATATAAAAACTACGTTACAAAAAGCGAAGTTGCTTCAGCAGTTGCATCTTTAAAATCTG
TCATAACACCTGCTGAACTTTTCTATCAAGAGAAAGGAACATTCCCTGCAAGTGAAGATGACTTAGCTTCGGTTGGTATT
AATTCTAGTTCAATTCAAAATGGTACACTTGGATTCGCGTCAAGCGCTATTGAACTAAACATTAGCTCATTGAGTCCTGC
AAAAGCGACGATTACAAGAGAGAGCACCGGGTGGAAGTGCGCTGTCTCAGGTTTGACAGACGCAACAAATGCTCCTAAGG
GCTGTCCTCAAGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.273 |
95.652 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
36.667 |
100 |
0.399 |
| pilA | Vibrio cholerae strain A1552 |
36.242 |
100 |
0.391 |
| pilA | Vibrio cholerae C6706 |
36.242 |
100 |
0.391 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.242 |
100 |
0.391 |
| pilA | Acinetobacter baumannii strain A118 |
39.416 |
99.275 |
0.391 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.762 |
100 |
0.391 |