Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RD110_RS06855 Genome accession   NZ_CP019236
Coordinates   1457314..1458531 (-) Length   405 a.a.
NCBI ID   WP_076197917.1    Uniprot ID   A0A1P8JT77
Organism   Rhodoferax koreense strain DCY-110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452314..1463531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RD110_RS06820 (RD110_06820) - 1452880..1453356 (+) 477 WP_076197904.1 NUDIX domain-containing protein -
  RD110_RS06825 (RD110_06825) - 1453395..1453622 (-) 228 WP_076197906.1 DNA gyrase inhibitor YacG -
  RD110_RS06830 (RD110_06830) zapD 1453640..1454395 (-) 756 WP_076197907.1 cell division protein ZapD -
  RD110_RS06835 (RD110_06835) coaE 1454421..1455020 (-) 600 WP_076197909.1 dephospho-CoA kinase -
  RD110_RS06840 (RD110_06840) - 1455034..1455903 (-) 870 WP_076197911.1 A24 family peptidase -
  RD110_RS06845 (RD110_06845) - 1456063..1456674 (+) 612 WP_076197913.1 2-hydroxychromene-2-carboxylate isomerase -
  RD110_RS06850 (RD110_06850) - 1456671..1457297 (+) 627 WP_076197915.1 glutathione binding-like protein -
  RD110_RS06855 (RD110_06855) pilC 1457314..1458531 (-) 1218 WP_076197917.1 type II secretion system F family protein Machinery gene
  RD110_RS06860 (RD110_06860) pilB 1458556..1460292 (-) 1737 WP_076197919.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RD110_RS06865 (RD110_06865) - 1460375..1461379 (-) 1005 WP_076197921.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44316.13 Da        Isoelectric Point: 9.4158

>NTDB_id=214316 RD110_RS06855 WP_076197917.1 1457314..1458531(-) (pilC) [Rhodoferax koreense strain DCY-110]
MATAASRDIKEFVFEWEGKDRNGKQVRGETRAVGENQVQATLRRQGVFPTKIKKRRMRSGKAIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNTNASVTKLLNDIRSDVETGSSLSGAFRKFPMYFNSLYCNLVEAGEAAGILESLLDRLAVYMEKT
EAIKSKIKSALMYPASVIVVAFVVVAVIMIFVIPAFKEVFSSFGADLPAPTLLVIAISEVFVAYWWLIFGGIFGAFYFFM
QAWKRNEKMQMFMDRLLLKVPVFGALIEKSCIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVFAIATEKIQQQVSTGT
SLTAAMTNANIFPSMVLQMCSIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=214316 RD110_RS06855 WP_076197917.1 1457314..1458531(-) (pilC) [Rhodoferax koreense strain DCY-110]
ATGGCAACAGCAGCGTCCAGAGACATCAAGGAATTTGTCTTCGAGTGGGAAGGCAAGGACCGCAATGGCAAACAGGTGCG
CGGCGAAACCCGTGCCGTGGGCGAAAACCAGGTCCAGGCCACGCTGCGCCGCCAGGGTGTGTTCCCCACGAAGATCAAGA
AGCGCCGCATGCGCTCGGGCAAGGCCATCAAGCCCAAGGACATCGCCATCTTCACGCGCCAGCTGGCGACGATGATGAAG
GCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTGGGCCGCGGCAACACCAACGCCAGCGTGACCAAGCTGCTCAACGA
CATCCGCTCCGACGTGGAAACCGGCAGCTCGCTCAGCGGCGCGTTCCGCAAGTTCCCGATGTACTTCAACAGCCTTTACT
GCAACCTCGTGGAAGCCGGCGAGGCCGCGGGTATCCTGGAGTCGCTGCTCGACCGGCTCGCGGTCTACATGGAGAAGACC
GAGGCCATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCGGCCTCGGTCATCGTGGTGGCTTTCGTCGTGGTGGCGGT
GATCATGATCTTCGTGATCCCGGCATTCAAGGAGGTGTTCAGCAGCTTCGGGGCCGACCTGCCCGCGCCCACGCTCCTGG
TGATCGCCATCAGCGAGGTCTTCGTCGCCTACTGGTGGCTGATCTTCGGCGGCATCTTCGGCGCGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGAAGATGCAGATGTTCATGGACCGGCTGCTGCTCAAGGTGCCTGTCTTCGGCGCGCTGAT
CGAGAAATCCTGCATCGCCCGCTGGACGCGCACCCTGTCGACCATGTTCGCGGCCGGCGTGCCGCTGGTCGAGGCGCTCG
ACTCGGTGGGCGGCGCGTCGGGCAATTCGGTGTTCGCCATCGCCACCGAGAAGATCCAGCAGCAGGTCTCCACCGGCACC
AGCCTCACCGCCGCTATGACCAACGCCAACATCTTCCCGTCGATGGTGCTGCAGATGTGCTCGATCGGCGAGGAATCCGG
CTCGATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAAGCCGAGGTCGACGACATGGTGGCCGGCCTGTCGAGCC
TGATGGAGCCGATCATCATCGTGTTCCTCGGCACCTTGATTGGCGGCATCGTGGTGTCGATGTACCTGCCGATCTTCAAG
CTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8JT77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.455

99.753

0.543
  pilG Neisseria gonorrhoeae MS11

52.02

97.778

0.509
  pilG Neisseria meningitidis 44/76-A

51.768

97.778

0.506
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Legionella pneumophila strain ERS1305867

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

48.615

98.025

0.477
  pilC Vibrio cholerae strain A1552

41.457

98.272

0.407
  pilC Thermus thermophilus HB27

37.081

100

0.383
  pilC Vibrio campbellii strain DS40M4

38.653

99.012

0.383

Multiple sequence alignment