Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BVH75_RS16670 Genome accession   NZ_CP019230
Coordinates   3156290..3157528 (-) Length   412 a.a.
NCBI ID   WP_048567512.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain YGd22-03     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3151290..3162528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH75_RS16645 (BVH75_16650) spoVS 3151376..3151636 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BVH75_RS16650 (BVH75_16655) - 3151786..3152580 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  BVH75_RS16655 (BVH75_16660) rny 3152743..3154305 (-) 1563 WP_000204911.1 ribonuclease Y -
  BVH75_RS16660 (BVH75_16665) - 3154787..3155209 (-) 423 Protein_3164 DNA recombination/repair protein RecA -
  BVH75_RS16665 (BVH75_16670) recA 3155537..3156145 (-) 609 Protein_3165 recombinase RecA -
  BVH75_RS16670 (BVH75_16675) cinA 3156290..3157528 (-) 1239 WP_048567512.1 competence/damage-inducible protein A Machinery gene
  BVH75_RS16675 (BVH75_16680) pgsA 3157549..3158127 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BVH75_RS16680 (BVH75_16685) - 3158192..3159103 (-) 912 WP_048567511.1 RodZ domain-containing protein -
  BVH75_RS16685 (BVH75_16690) - 3159125..3159910 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BVH75_RS16690 (BVH75_16695) - 3160049..3160297 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  BVH75_RS16695 (BVH75_16700) - 3160373..3161086 (-) 714 WP_048567510.1 SDR family oxidoreductase -
  BVH75_RS16700 (BVH75_16705) - 3161187..3162473 (-) 1287 WP_048567509.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45478.82 Da        Isoelectric Point: 5.5024

>NTDB_id=214281 BVH75_RS16670 WP_048567512.1 3156290..3157528(-) (cinA) [Bacillus thuringiensis strain YGd22-03]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANNHGMAPGMGVNKNGKVYVLLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSVKDEPTVVFPLNLSGSRQQIRERTVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=214281 BVH75_RS16670 WP_048567512.1 3156290..3157528(-) (cinA) [Bacillus thuringiensis strain YGd22-03]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAATGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGCTTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATAACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATGTTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTTTTTGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTCGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGG
TTAAGGATGAGCCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGTAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.01

100

0.58
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367

Multiple sequence alignment