Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BV404_RS01915 Genome accession   NZ_CP019118
Coordinates   397413..398639 (-) Length   408 a.a.
NCBI ID   WP_075988153.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392413..403639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS01890 parC 392532..394805 (+) 2274 WP_044366754.1 DNA topoisomerase IV subunit A -
  BV404_RS01895 yacG 394856..395053 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  BV404_RS01900 zapD 395108..395848 (-) 741 WP_075988151.1 cell division protein ZapD -
  BV404_RS01905 coaE 395881..396489 (-) 609 WP_075988152.1 dephospho-CoA kinase -
  BV404_RS01910 pilD 396492..397361 (-) 870 WP_047459100.1 prepilin peptidase Machinery gene
  BV404_RS01915 pilC 397413..398639 (-) 1227 WP_075988153.1 type II secretion system F family protein Machinery gene
  BV404_RS01920 pilB 398675..400363 (-) 1689 WP_075988154.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BV404_RS01925 - 400363..400791 (-) 429 WP_044364133.1 pilin -
  BV404_RS01930 nadC 401023..401910 (-) 888 WP_044364132.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BV404_RS01935 ampD 402064..402615 (+) 552 WP_032081227.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BV404_RS01940 fldB 402620..403141 (-) 522 WP_020430452.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44755.08 Da        Isoelectric Point: 10.5318

>NTDB_id=213262 BV404_RS01915 WP_075988153.1 397413..398639(-) (pilC) [Vibrio fluvialis strain 12605]
MKPTKGPELKNYRWKGVNSTGKKVAGQILAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAAAFIVSLGLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLTKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=213262 BV404_RS01915 WP_075988153.1 397413..398639(-) (pilC) [Vibrio fluvialis strain 12605]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAGAAAGTCGCGGGACA
GATACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCATATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCGGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCGATTGTGCAGGCGCTTAAATTGGTCGGCGATAATCATCGCAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCTGGTACGCCGATCTCCAAAGCGATGCGTACCGCCAGCACTCACTTTGACGCGT
TGTACGTCGACCTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGCGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAAGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTGTCGCACGGGGTACAAGCCTACAGTGCGGCGGCGTTCATCGTTTCCTTGGGCTTGGTGTTTGGC
ATCAAAGCGGCACGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGTCAGCTCAGCCTGCGTTTTCCCATCATTGGCGG
TGTGCTTACCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCCAAAACAGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCGGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.52

100

0.865
  pilC Vibrio campbellii strain DS40M4

73.105

100

0.733
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Acinetobacter baylyi ADP1

41.562

97.304

0.404
  pilC Legionella pneumophila strain ERS1305867

41.353

97.794

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.152

97.059

0.39
  pilG Neisseria gonorrhoeae MS11

39.75

98.039

0.39
  pilG Neisseria meningitidis 44/76-A

39.25

98.039

0.385

Multiple sequence alignment