Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | CS058_RS24965 | Genome accession | NZ_CP024477 |
| Coordinates | 5238618..5239082 (-) | Length | 154 a.a. |
| NCBI ID | WP_023129290.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 12939 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5233618..5244082
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS058_RS24950 | nadC | 5236118..5236966 (+) | 849 | WP_023098057.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CS058_RS24960 | - | 5237147..5238460 (-) | 1314 | WP_237754601.1 | O-antigen ligase family protein | - |
| CS058_RS24965 | pilA/pilAI | 5238618..5239082 (-) | 465 | WP_023129290.1 | pilin | Machinery gene |
| CS058_RS24970 | pilB | 5239313..5241013 (+) | 1701 | WP_099887683.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CS058_RS24975 | pilC | 5241017..5242234 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| CS058_RS24980 | pilD | 5242235..5243107 (+) | 873 | WP_023084740.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| CS058_RS24985 | coaE | 5243104..5243715 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| CS058_RS24990 | yacG | 5243712..5243912 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16148.47 Da Isoelectric Point: 8.9986
>NTDB_id=212977 CS058_RS24965 WP_023129290.1 5238618..5239082(-) (pilA/pilAI) [Pseudomonas aeruginosa strain 12939]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGDGKGQIKIDKADTATPEISGTLGRSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGDGKGQIKIDKADTATPEISGTLGRSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=212977 CS058_RS24965 WP_023129290.1 5238618..5239082(-) (pilA/pilAI) [Pseudomonas aeruginosa strain 12939]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATATCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCCGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATATCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCCGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.516 |
100 |
0.448 |
| pilA | Acinetobacter baumannii strain A118 |
42.857 |
100 |
0.429 |
| pilA | Pseudomonas aeruginosa PAK |
41.139 |
100 |
0.422 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.059 |
100 |
0.409 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.073 |
98.052 |
0.383 |
| pilA | Vibrio cholerae strain A1552 |
39.073 |
98.052 |
0.383 |
| pilA | Vibrio cholerae C6706 |
39.073 |
98.052 |
0.383 |
| pilA2 | Legionella pneumophila str. Paris |
37.838 |
96.104 |
0.364 |