Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJD10_RS19765 Genome accession   NZ_CP018728
Coordinates   4406673..4407929 (+) Length   418 a.a.
NCBI ID   WP_043907071.1    Uniprot ID   A0A6V7CAU3
Organism   Xanthomonas hortorum pv. gardneri strain JS749-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4401673..4412929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD10_RS19740 (BJD10_19740) pilR 4401757..4403211 (+) 1455 WP_172839272.1 sigma-54 dependent transcriptional regulator Regulator
  BJD10_RS19745 (BJD10_19745) - 4403285..4403467 (+) 183 WP_074066024.1 YhfG family protein -
  BJD10_RS19750 (BJD10_19750) pilB 4403597..4405333 (-) 1737 WP_043907067.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJD10_RS19755 (BJD10_19755) - 4405398..4405829 (-) 432 WP_043907066.1 pilin -
  BJD10_RS19760 (BJD10_19760) pilA 4405906..4406322 (-) 417 WP_006448362.1 pilin Machinery gene
  BJD10_RS19765 (BJD10_19765) pilC 4406673..4407929 (+) 1257 WP_043907071.1 type II secretion system F family protein Machinery gene
  BJD10_RS19770 (BJD10_19770) - 4407936..4408799 (+) 864 WP_002812278.1 A24 family peptidase -
  BJD10_RS19775 (BJD10_19775) coaE 4408813..4409436 (+) 624 WP_006448360.1 dephospho-CoA kinase -
  BJD10_RS19780 (BJD10_19780) - 4409970..4410371 (+) 402 WP_006448359.1 SymE family type I addiction module toxin -
  BJD10_RS19785 (BJD10_19785) - 4410469..4410654 (+) 186 WP_006448358.1 hypothetical protein -
  BJD10_RS19790 (BJD10_19790) - 4410651..4410953 (+) 303 WP_006448357.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BJD10_RS19795 (BJD10_19795) - 4411089..4412423 (-) 1335 WP_006448356.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45545.04 Da        Isoelectric Point: 10.3591

>NTDB_id=209901 BJD10_RS19765 WP_043907071.1 4406673..4407929(+) (pilC) [Xanthomonas hortorum pv. gardneri strain JS749-3]
MSAVRSAVKAKPASQAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLMVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRKMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAILVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LIVAVGAIVGFIFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VIRMREDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=209901 BJD10_RS19765 WP_043907071.1 4406673..4407929(+) (pilC) [Xanthomonas hortorum pv. gardneri strain JS749-3]
ATGTCGGCAGTACGTAGTGCAGTCAAAGCCAAGCCTGCCTCACAGGCTGAACAGATGAGCCCATTTGTTTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAGGGCGAACAGACCGCCCGTAATGCCAATTTGCTACGCGCAGAATTGCGGAGGCAAG
GCATCACACCACTGATGGTCAAAGTGAAGCCCAAACCGCTATTTGGTGCTGCGGGCAAGAAAGTCTCCGCAAAGGATATC
TCTTTCTTTAGTCGACAGATGGCCACAATGATGAAATCAGGTGTACCTATCGTAGGCGCACTGGAGATCATTGGCAGCGG
ACAGAAAAATCCACGCATGCGCAAAATGGTTGGGCAGATCCGTACCGATATCGAAGGAGGATCGTCGCTACATGAGGCCG
TAAGCAAGCACCCAGTGCAGTTTGACGAGCTCTATCGGAACTTGGTCAAGGCAGGCGAAGGCGCAGGCGTGTTGGAAACT
GTGCTGGACACTGTTGCTACTTATAAAGAGAATCTGGAAGCACTTAAGGGCAAGATTAAAAAAGCACTATTTTATCCAGC
CATGGTCATGGCAGTAGCAATTCTGGTGAGTTCAATCTTGCTCGTCTGGGTCGTCCCCCAATTTGAAGACGTCTTTAAGG
GCTTCGGCGCAGAGCTTCCCGCTTTTACCCAAATGATCGTCAACTTATCGCGTTTTATGGTGTCTTGGTGGTGGCTGATG
TTGATCGTAGCCGTGGGCGCAATAGTGGGCTTTATCTTCGCGTATAAGCGCTCGCCAGCAATGCAACACGGCATGGATCG
CTTGATCCTTAAAGTGCCGATCATTGGCCAGATCATGCACAACAGCTCTATCGCGCGTTTTGCTCGCACAACGGCCGTCA
CATTCAAAGCAGGCGTACCTCTAGTCGAGGCACTCGGTATTGTGGCCGGTGCTACAGGCAACTCTGTCTATGAAAAAGCG
GTAATTCGCATGCGCGAAGACGTATCTGTGGGCTATCCCGTCAACATGGCGATGAAGCAAGTCAATCTGTTCCCTCACAT
GGTGGTGCAGATGACTGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCCATGCTGTTCAAAGTGGCTGAGTACTTCGAGC
AAGAGGTCAACAATGCTGTCGACGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTATTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CAU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.086

96.89

0.514
  pilC Acinetobacter baumannii D1279779

52.475

96.651

0.507
  pilC Acinetobacter baylyi ADP1

51.97

97.129

0.505
  pilC Legionella pneumophila strain ERS1305867

52.02

94.737

0.493
  pilG Neisseria gonorrhoeae MS11

43.564

96.651

0.421
  pilG Neisseria meningitidis 44/76-A

43.069

96.651

0.416
  pilC Vibrio cholerae strain A1552

41.626

97.129

0.404
  pilC Vibrio campbellii strain DS40M4

39.702

96.411

0.383

Multiple sequence alignment