Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BJD10_RS19740 Genome accession   NZ_CP018728
Coordinates   4401757..4403211 (+) Length   484 a.a.
NCBI ID   WP_172839272.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. gardneri strain JS749-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4396757..4408211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD10_RS19725 (BJD10_19725) sucD 4397756..4398631 (-) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -
  BJD10_RS19730 (BJD10_19730) sucC 4398656..4399825 (-) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  BJD10_RS19735 (BJD10_19735) - 4400058..4401671 (+) 1614 WP_006448368.1 HAMP domain-containing sensor histidine kinase -
  BJD10_RS19740 (BJD10_19740) pilR 4401757..4403211 (+) 1455 WP_172839272.1 sigma-54 dependent transcriptional regulator Regulator
  BJD10_RS19745 (BJD10_19745) - 4403285..4403467 (+) 183 WP_074066024.1 YhfG family protein -
  BJD10_RS19750 (BJD10_19750) pilB 4403597..4405333 (-) 1737 WP_043907067.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJD10_RS19755 (BJD10_19755) - 4405398..4405829 (-) 432 WP_043907066.1 pilin -
  BJD10_RS19760 (BJD10_19760) pilA 4405906..4406322 (-) 417 WP_006448362.1 pilin Machinery gene
  BJD10_RS19765 (BJD10_19765) pilC 4406673..4407929 (+) 1257 WP_043907071.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52489.15 Da        Isoelectric Point: 6.6690

>NTDB_id=209898 BJD10_RS19740 WP_172839272.1 4401757..4403211(+) (pilR) [Xanthomonas hortorum pv. gardneri strain JS749-3]
MGPNPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMQSLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISAS
DLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=209898 BJD10_RS19740 WP_172839272.1 4401757..4403211(+) (pilR) [Xanthomonas hortorum pv. gardneri strain JS749-3]
GTGGGCCCAAACCCCGACGACAATTGTCGTCCGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACTG
CTGCCAATCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAACCCCTACGACCTGTGCCTGACCGACATGCGCCTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCACCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGCAAAGCCTGCGCGCCACCATCGGCAAGGTCGCACGCAGCCAGGCGCCGGTCTATAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTGAACTGCGGCGCCATTCCCGCCGAATTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCTGGCCTGTTCCAGGCCGCGCATGGCGGTACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCT
GCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCCTCCACCGAATCGCTGGTGG
ACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTTTTCGTCACGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCACTCGACGCGCTGGACACATACGGTT
TTCCCGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGC
GATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTGGGCATCACGTTTCGTGCGCTGCGCTACAAGCTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-135)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.353

95.868

0.473

Multiple sequence alignment