Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJD13_RS22565 Genome accession   NZ_CP018475
Coordinates   4687800..4689062 (-) Length   420 a.a.
NCBI ID   WP_033479185.1    Uniprot ID   A0A0G8TTY0
Organism   Xanthomonas perforans strain LH3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4682800..4694062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD13_RS22540 (BJD13_22670) - 4683769..4684212 (+) 444 WP_008576857.1 hypothetical protein -
  BJD13_RS22545 (BJD13_22675) - 4684238..4684915 (+) 678 WP_003490678.1 response regulator transcription factor -
  BJD13_RS22550 (BJD13_22680) - 4684908..4686242 (+) 1335 WP_008576864.1 HAMP domain-containing sensor histidine kinase -
  BJD13_RS22555 (BJD13_22685) coaE 4686311..4686916 (-) 606 WP_008576866.1 dephospho-CoA kinase -
  BJD13_RS22560 (BJD13_22690) - 4686930..4687793 (-) 864 WP_008576868.1 A24 family peptidase -
  BJD13_RS22565 (BJD13_22695) pilC 4687800..4689062 (-) 1263 WP_033479185.1 type II secretion system F family protein Machinery gene
  BJD13_RS22570 (BJD13_22700) pilA/pilAI 4689411..4689803 (+) 393 WP_074053364.1 pilin Machinery gene
  BJD13_RS22575 (BJD13_22705) - 4689896..4690315 (+) 420 WP_033479197.1 pilin -
  BJD13_RS22580 (BJD13_22710) - 4690360..4692192 (+) 1833 WP_008576878.1 hypothetical protein -
  BJD13_RS22585 (BJD13_22715) - 4692314..4693012 (+) 699 WP_158070652.1 class I SAM-dependent methyltransferase -
  BJD13_RS24830 (BJD13_22720) - 4693009..4693923 (+) 915 WP_126952614.1 lysylphosphatidylglycerol synthase domain-containing protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45796.17 Da        Isoelectric Point: 10.2311

>NTDB_id=208859 BJD13_RS22565 WP_033479185.1 4687800..4689062(-) (pilC) [Xanthomonas perforans strain LH3]
MSAVRSTIKSKPAAISADQQMSPFVWEGTDKRGVKMKGEQIARNANMLRAELRRQGITPSVVKPKPKPLFGAAGKKITPK
EIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVL
ETVLDTIASYKENLEALKGKIKKALFYPAMVVAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWW
LLLLVIVGSIVGFIFAYKRSFAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYE
KAVLRMREDVSVGYPVNVSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTV
VGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=208859 BJD13_RS22565 WP_033479185.1 4687800..4689062(-) (pilC) [Xanthomonas perforans strain LH3]
ATGTCGGCAGTCCGTAGCACCATCAAGAGCAAGCCAGCGGCCATTAGCGCCGATCAACAGATGAGCCCGTTCGTCTGGGA
GGGGACAGACAAGCGGGGGGTAAAAATGAAGGGCGAACAGATCGCCCGCAACGCCAATATGTTACGGGCAGAACTTCGTC
GCCAAGGCATCACGCCCAGCGTCGTCAAGCCCAAGCCCAAGCCATTGTTTGGCGCGGCAGGCAAGAAGATCACGCCTAAG
GAAATTGCGTTCTTCAGTCGCCAGATGGCCACCATGATGAAATCTGGCGTGCCTATCGTTGGGTCGCTGGAGATCATCGG
CAATGGTCACAAAAACCCTCGCATGAAACAGATGGTCGGACAAATCCGTACCGACATCGAGGGCGGTTCTTCTCTGCACG
AAGCGGTAAGCAAGCATCCAGTGCAGTTCGACGAGCTGTATCGCAACCTCGTCAAGGCCGGCGAAGGCGCTGGTGTGCTG
GAAACCGTCCTGGACACAATCGCGTCGTATAAAGAGAATCTGGAAGCCCTAAAGGGCAAGATCAAGAAGGCGCTGTTCTA
TCCCGCGATGGTCGTGGCGGTTGCCCTGCTCGTCAGCTCGATCTTGTTGATCTGGGTCGTGCCGCAGTTCGAGGATGTGT
TCAAGGGGTTCGGCGCAGAACTGCCAGCCTTCACCCAGCTGATCGTCAATGCGTCCCGATTCATGGTCTCGTATTGGTGG
CTACTGCTGCTTGTGATCGTTGGCTCGATCGTGGGCTTCATCTTTGCCTACAAGCGCTCGTTTGCGATGCAGCATGGAAT
GGATCGCTTGGTGCTCAAGGTGCCGATCATTGGCCAGATCATGCATAACAGCTCGATTGCGCGCTTTGCGCGCACTACCG
CAGTGACCTTCAAGGCGGGCGTGCCACTGGTGGAGGCACTCGGCATTGTTGCTGGCGCCACCGGTAACTCAGTCTATGAG
AAGGCCGTACTGCGTATGCGCGAGGACGTATCGGTGGGTTATCCGGTCAACGTGTCTATGAAACAGGTCAATCTGTTCCC
TCACATGGTGATCCAGATGACAGCGATCGGCGAGGAAGCGGGCGCACTGGATGCCATGCTGTTCAAGGTAGCCGAGTACT
ACGAGCAGGAAGTAAACAATGCGGTAGATGCACTTAGCAGCCTCATCGAACCCTTGATCATGGTGTTCATTGGTACAGTA
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8TTY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.334

96.905

0.507
  pilC Pseudomonas stutzeri DSM 10701

52.764

94.762

0.5
  pilC Legionella pneumophila strain ERS1305867

52.273

94.286

0.493
  pilC Acinetobacter baumannii D1279779

50.86

96.905

0.493
  pilG Neisseria gonorrhoeae MS11

44.25

95.238

0.421
  pilG Neisseria meningitidis 44/76-A

43.641

95.476

0.417
  pilC Vibrio cholerae strain A1552

42.317

94.524

0.4
  pilC Vibrio campbellii strain DS40M4

39.401

95.476

0.376

Multiple sequence alignment