Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BI313_RS09655 Genome accession   NZ_CP018470
Coordinates   1917888..1919150 (+) Length   420 a.a.
NCBI ID   WP_039421892.1    Uniprot ID   A0AAJ0J1C5
Organism   Xanthomonas vesicatoria strain LM159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1912888..1924150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI313_RS09635 (BI313_09560) - 1913811..1914605 (-) 795 WP_039421896.1 glycosyltransferase family A protein -
  BI313_RS23970 - 1914610..1915251 (-) 642 WP_080764189.1 EamA family transporter -
  BI313_RS09645 (BI313_09570) - 1915335..1915751 (+) 417 WP_039421894.1 pilin -
  BI313_RS09650 (BI313_09575) - 1915818..1917779 (+) 1962 WP_039421893.1 hypothetical protein -
  BI313_RS09655 (BI313_09580) pilC 1917888..1919150 (+) 1263 WP_039421892.1 type II secretion system F family protein Machinery gene
  BI313_RS09660 (BI313_09585) - 1919157..1920020 (+) 864 WP_005992825.1 A24 family peptidase -
  BI313_RS09665 (BI313_09590) coaE 1920034..1920639 (+) 606 WP_005992824.1 dephospho-CoA kinase -
  BI313_RS09670 (BI313_09595) - 1920712..1922046 (-) 1335 WP_005992823.1 HAMP domain-containing sensor histidine kinase -
  BI313_RS09675 (BI313_09600) - 1922039..1922716 (-) 678 WP_003490678.1 response regulator transcription factor -
  BI313_RS09680 (BI313_09605) - 1922747..1923241 (-) 495 WP_228862180.1 hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45862.42 Da        Isoelectric Point: 10.3578

>NTDB_id=208839 BI313_RS09655 WP_039421892.1 1917888..1919150(+) (pilC) [Xanthomonas vesicatoria strain LM159]
MSTLGSTVKKGAKPASRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGAAGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKAMFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWL
PILLVIVGSAVGLIMAYKRSPKMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=208839 BI313_RS09655 WP_039421892.1 1917888..1919150(+) (pilC) [Xanthomonas vesicatoria strain LM159]
ATGTCAACACTGGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAGTCGCGTTAATGCGATGACGTCGTTCGTCTGGGA
GGGGACAGACAAGCGTGGCGTCAAAATGAAGGGGGACGAGCTGGCTCGCAATGCGAACATGCTGCGCGCCGAACTCCGCC
GCAGGGGAATCAACCCCACCGTCGTCAAGACAAAGCCCAAGCCGCTGTTCGGCGCGGCCGGCAAGCCGATCAAACCAAAG
GACATCGCATTTTTCAGTCGCCAGATTGCGACCATGATGAAGTCAGGCGTTCCCATGGTCGGGACCCTGGAAATCATCGG
CGAGGGCTCCAAAAATCCTCGTATGCGAAAGATGGTTGGCGAAATCCGTACCGACATCGAAGGCGGATCATCGCTCAATG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTCTATCGCAACCTTGTCCGAGCAGGCGAAAGCGCCGGCGTGCTG
GATACGGTGCTGGATACTGTGGCGACCTATAAGGAAAATATTGAAGCACTAAAGGGCAAGATCAAGAAAGCCATGTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATACTGCTAATCTGGGTGGTACCGCAGTTCGAAACGGTAT
TCTCGAGCTTCGGTGCGGAATTACCTGCATTCACCCAGATGATCGTGAATCTTTCGCGATTCATGGTTTCGTGGTGGTTG
CCAATCTTGTTGGTGATCGTCGGGTCGGCGGTGGGGCTGATCATGGCCTATAAGCGCTCTCCAAAGATGCAGCACCTGTT
TGATCGTCTGATTCTGAAAGTGCCTGTCATTGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGGACGACCG
CCGTCACCTTCAAGGCGGGCGTTCCTTTGGTCGAAGCGCTGGGAATTGTCGCCGGCGCGACGGGTAACAAAGTCTACGAG
GAGGCAGTTCTGCGTATGCGCGACGACGTCTCCGTAGGCTACCCAGTAAATCTGTCGATGAAGCAGGTCAACCTGTTCCC
TCACATGGTCATTCAGATGACGGCGATCGGTGAAGAGGCCGGCGCGCTGGATGCAATGCTGTTCAAGGTTGCGGAATACT
TTGAGCAAGAAGTCAACAATGCCGTCGATGCACTGAGTAGCCTGCTTGAGCCTATGATCATGATCTTCATCGGCACGATC
GTCGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.286

0.514
  pilC Legionella pneumophila strain ERS1305867

50.877

95

0.483
  pilC Acinetobacter baylyi ADP1

49.754

96.667

0.481
  pilC Acinetobacter baumannii D1279779

48.515

96.19

0.467
  pilG Neisseria meningitidis 44/76-A

42.928

95.952

0.412
  pilG Neisseria gonorrhoeae MS11

42.394

95.476

0.405
  pilC Vibrio cholerae strain A1552

39.163

96.667

0.379
  pilC Vibrio campbellii strain DS40M4

39.651

95.476

0.379
  pilC Thermus thermophilus HB27

38.614

96.19

0.371

Multiple sequence alignment