Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | BSZ05_RS11105 | Genome accession | NZ_CP018308 |
| Coordinates | 2331148..2331441 (+) | Length | 97 a.a. |
| NCBI ID | WP_088876861.1 | Uniprot ID | A0AAN1KNC5 |
| Organism | Vibrio mediterranei strain QT6D1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2326148..2336441
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ05_RS11095 (BSZ05_11040) | - | 2328659..2328931 (+) | 273 | WP_006075676.1 | HU family DNA-binding protein | - |
| BSZ05_RS11100 (BSZ05_11045) | ppiD | 2329117..2330976 (+) | 1860 | WP_088876860.1 | peptidylprolyl isomerase | - |
| BSZ05_RS11105 (BSZ05_11050) | comEA | 2331148..2331441 (+) | 294 | WP_088876861.1 | ComEA family DNA-binding protein | Machinery gene |
| BSZ05_RS11110 (BSZ05_11055) | rrtA | 2331424..2331987 (-) | 564 | WP_088876862.1 | rhombosortase | - |
| BSZ05_RS11115 (BSZ05_11060) | - | 2331986..2332606 (+) | 621 | WP_088877652.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| BSZ05_RS11120 (BSZ05_11065) | - | 2332626..2333957 (-) | 1332 | WP_088876863.1 | anti-phage deoxyguanosine triphosphatase | - |
| BSZ05_RS11125 (BSZ05_11070) | yfbR | 2333976..2334560 (-) | 585 | WP_006075259.1 | 5'-deoxynucleotidase | - |
| BSZ05_RS11130 (BSZ05_11075) | - | 2334644..2335858 (-) | 1215 | WP_088876864.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10746.36 Da Isoelectric Point: 5.1767
>NTDB_id=207961 BSZ05_RS11105 WP_088876861.1 2331148..2331441(+) (comEA) [Vibrio mediterranei strain QT6D1]
MKYLKNVWLLVVLLVVPVSFSYASEAKKLEGIEITVNINQAGPEELAELLKGVGEEKAKDIVEYRDQHGSFKSADDLTQV
KGIGDATVEKNRSRITL
MKYLKNVWLLVVLLVVPVSFSYASEAKKLEGIEITVNINQAGPEELAELLKGVGEEKAKDIVEYRDQHGSFKSADDLTQV
KGIGDATVEKNRSRITL
Nucleotide
Download Length: 294 bp
>NTDB_id=207961 BSZ05_RS11105 WP_088876861.1 2331148..2331441(+) (comEA) [Vibrio mediterranei strain QT6D1]
ATGAAGTATCTAAAAAACGTTTGGCTGCTAGTAGTGTTGTTAGTTGTCCCTGTGAGCTTTTCCTATGCATCCGAAGCGAA
GAAACTAGAGGGGATAGAGATAACAGTCAATATCAACCAAGCGGGCCCAGAGGAACTAGCGGAACTGCTCAAAGGTGTTG
GCGAGGAAAAAGCAAAAGATATTGTGGAGTATCGCGATCAACACGGAAGTTTTAAATCGGCAGATGATTTAACTCAAGTG
AAAGGTATTGGTGATGCAACGGTAGAGAAGAACCGTTCAAGAATCACTTTGTAA
ATGAAGTATCTAAAAAACGTTTGGCTGCTAGTAGTGTTGTTAGTTGTCCCTGTGAGCTTTTCCTATGCATCCGAAGCGAA
GAAACTAGAGGGGATAGAGATAACAGTCAATATCAACCAAGCGGGCCCAGAGGAACTAGCGGAACTGCTCAAAGGTGTTG
GCGAGGAAAAAGCAAAAGATATTGTGGAGTATCGCGATCAACACGGAAGTTTTAAATCGGCAGATGATTTAACTCAAGTG
AAAGGTATTGGTGATGCAACGGTAGAGAAGAACCGTTCAAGAATCACTTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
58.696 |
94.845 |
0.557 |
| comEA | Vibrio campbellii strain DS40M4 |
56.989 |
95.876 |
0.546 |
| comEA | Vibrio cholerae C6706 |
60 |
77.32 |
0.464 |
| comEA | Vibrio cholerae strain A1552 |
60 |
77.32 |
0.464 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comEA | Acinetobacter baylyi ADP1 |
51.351 |
76.289 |
0.392 |
| comEA | Acinetobacter baumannii strain A118 |
48.649 |
76.289 |
0.371 |