Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BSZ05_RS04175 Genome accession   NZ_CP018308
Coordinates   928814..930040 (+) Length   408 a.a.
NCBI ID   WP_088876261.1    Uniprot ID   A0AAN1KM80
Organism   Vibrio mediterranei strain QT6D1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 923814..935040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS04155 (BSZ05_04145) ampD 924781..925365 (-) 585 WP_088876257.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BSZ05_RS04160 (BSZ05_04150) nadC 925501..926391 (+) 891 WP_088876258.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BSZ05_RS04165 (BSZ05_04155) - 926633..927112 (+) 480 WP_088876259.1 pilin -
  BSZ05_RS04170 (BSZ05_04160) pilB 927112..928803 (+) 1692 WP_173670880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSZ05_RS04175 (BSZ05_04165) pilC 928814..930040 (+) 1227 WP_088876261.1 type II secretion system F family protein Machinery gene
  BSZ05_RS04180 (BSZ05_04170) pilD 930083..930952 (+) 870 WP_088876262.1 prepilin peptidase Machinery gene
  BSZ05_RS04185 (BSZ05_04175) coaE 930955..931563 (+) 609 WP_088876263.1 dephospho-CoA kinase -
  BSZ05_RS04190 (BSZ05_04180) zapD 931595..932335 (+) 741 WP_031494891.1 cell division protein ZapD -
  BSZ05_RS04195 (BSZ05_04185) yacG 932357..932551 (+) 195 WP_006074419.1 DNA gyrase inhibitor YacG -
  BSZ05_RS04200 (BSZ05_04190) rplS 932750..933103 (-) 354 WP_006074418.1 50S ribosomal protein L19 -
  BSZ05_RS04205 (BSZ05_04195) trmD 933146..933895 (-) 750 WP_038224311.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BSZ05_RS04210 (BSZ05_04200) rimM 933930..934487 (-) 558 WP_031494889.1 ribosome maturation factor RimM -
  BSZ05_RS04215 (BSZ05_04205) rpsP 934508..934756 (-) 249 WP_031494887.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44987.09 Da        Isoelectric Point: 9.8608

>NTDB_id=207938 BSZ05_RS04175 WP_088876261.1 928814..930040(+) (pilC) [Vibrio mediterranei strain QT6D1]
MPNPLPMPLRKFRWRGVDRSGAKVKGQILALTEMEVRNQLGLQQIHISKISRHRISFWTRLTHKISRKDITLFTRQLATL
LTTRVPLVQALKLISESHSKAEMKSILNQVTSRVESGVPIAQALQALSTHFDRFYIDMIATGESSGNIAVTLDRLATYRE
KHDALQSKVVKAMIYPGMVLIVSCAVTYLMLTSVIPEFESMFKGFNANLPWLTSEVLELSNWSQSYGLVSVASLGLLIAS
IKFICLKNATAELCISKLAIKLPVVGDIITKATIAKFSRTLATSFSSGIPILTGIQASARTTENAYFQQAIFSIHTHVVA
GVPVHLAMRNSLAFPEMVLQMVMIGEETGKLDEMLNKIASIYEADVDNIVDNLGTIIEPLVIVFLGTIIGGLVIAMYLPI
FNLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=207938 BSZ05_RS04175 WP_088876261.1 928814..930040(+) (pilC) [Vibrio mediterranei strain QT6D1]
ATGCCTAACCCGCTTCCTATGCCATTAAGAAAATTCCGCTGGAGAGGCGTTGATCGATCTGGCGCAAAAGTAAAAGGGCA
AATCCTTGCTTTAACCGAAATGGAGGTCCGAAATCAATTAGGTCTGCAACAAATCCATATCAGCAAAATTTCTCGCCATC
GCATTTCGTTTTGGACCAGATTAACCCACAAGATTTCACGCAAAGACATCACTCTATTCACTAGGCAATTGGCTACCTTG
CTGACGACAAGAGTTCCTCTTGTTCAAGCCCTTAAGCTTATCTCTGAGAGCCACTCCAAAGCCGAAATGAAATCGATCCT
TAATCAGGTCACTAGCCGAGTGGAAAGTGGTGTCCCTATCGCTCAAGCGCTACAAGCACTAAGTACACATTTTGACCGCT
TCTATATCGATATGATTGCGACGGGCGAATCGTCCGGAAACATTGCGGTGACGTTAGATAGGTTAGCAACATATCGTGAA
AAACATGATGCTCTGCAGTCTAAGGTCGTTAAAGCCATGATATATCCAGGTATGGTGCTGATAGTTTCTTGTGCCGTAAC
CTATTTGATGCTCACGAGTGTGATTCCTGAATTTGAATCGATGTTTAAAGGGTTCAATGCCAATTTACCTTGGCTCACAT
CCGAGGTGCTGGAGCTATCAAACTGGAGCCAATCATACGGACTGGTTAGCGTTGCTTCTCTAGGTTTATTGATTGCTAGC
ATTAAGTTTATTTGCCTTAAAAATGCTACTGCCGAATTATGTATAAGTAAATTAGCCATCAAACTGCCCGTTGTTGGCGA
CATCATTACCAAAGCAACCATTGCCAAATTTAGCCGAACATTAGCGACCAGTTTTAGTTCTGGAATACCGATACTCACAG
GCATACAAGCGAGTGCAAGAACAACAGAGAACGCTTACTTTCAACAAGCTATTTTTTCTATACACACTCATGTCGTAGCG
GGCGTACCTGTTCATTTAGCAATGCGAAACAGTCTCGCTTTCCCTGAGATGGTGCTGCAAATGGTCATGATAGGTGAAGA
AACTGGCAAGTTAGATGAAATGCTCAATAAGATCGCTAGCATCTATGAGGCGGATGTCGATAACATCGTAGACAACTTAG
GAACAATCATTGAGCCTTTGGTTATTGTCTTCCTTGGCACAATAATTGGCGGGTTAGTGATTGCAATGTACTTACCTATC
TTTAACTTAATGTCGGTAATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

56.219

98.529

0.554
  pilC Vibrio campbellii strain DS40M4

55.112

98.284

0.542
  pilC Acinetobacter baylyi ADP1

40.299

98.529

0.397
  pilC Acinetobacter baumannii D1279779

39.098

97.794

0.382
  pilC Pseudomonas stutzeri DSM 10701

39.196

97.549

0.382
  pilC Legionella pneumophila strain ERS1305867

37.811

98.529

0.373
  pilG Neisseria meningitidis 44/76-A

36.658

98.284

0.36

Multiple sequence alignment