Detailed information NTG0207939

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BSZ05_RS04180
• Genome accession: NZ_CP018308
• Coordinates: 930083..930952 (+)
• Length: 289 a.a.
• NCBI ID: WP_088876262.1
• Uniprot ID: A0AAN1KM51
• Organism: Vibrio mediterranei strain QT6D1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 925083..935952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSZ05_RS04160 (BSZ05_04150)	nadC	925501..926391 (+)	891	WP_088876258.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BSZ05_RS04165 (BSZ05_04155)	-	926633..927112 (+)	480	WP_088876259.1	pilin	-
BSZ05_RS04170 (BSZ05_04160)	pilB	927112..928803 (+)	1692	WP_173670880.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BSZ05_RS04175 (BSZ05_04165)	pilC	928814..930040 (+)	1227	WP_088876261.1	type II secretion system F family protein	Machinery gene
BSZ05_RS04180 (BSZ05_04170)	pilD	930083..930952 (+)	870	WP_088876262.1	prepilin peptidase	Machinery gene
BSZ05_RS04185 (BSZ05_04175)	coaE	930955..931563 (+)	609	WP_088876263.1	dephospho-CoA kinase	-
BSZ05_RS04190 (BSZ05_04180)	zapD	931595..932335 (+)	741	WP_031494891.1	cell division protein ZapD	-
BSZ05_RS04195 (BSZ05_04185)	yacG	932357..932551 (+)	195	WP_006074419.1	DNA gyrase inhibitor YacG	-
BSZ05_RS04200 (BSZ05_04190)	rplS	932750..933103 (-)	354	WP_006074418.1	50S ribosomal protein L19	-
BSZ05_RS04205 (BSZ05_04195)	trmD	933146..933895 (-)	750	WP_038224311.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BSZ05_RS04210 (BSZ05_04200)	rimM	933930..934487 (-)	558	WP_031494889.1	ribosome maturation factor RimM	-
BSZ05_RS04215 (BSZ05_04205)	rpsP	934508..934756 (-)	249	WP_031494887.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32330.63 Da
• Isoelectric Point: 6.9212

>NTDB_id=207939 BSZ05_RS04180 WP_088876262.1 930083..930952(+) (pilD) [Vibrio mediterranei strain QT6D1]
MDAFSYYPWLFPAFAALFGLIVGSFLNVVIYRLPIMMERGWREECAEAFPEYKIAPPEDKFNLSVPRSACPKCHTPIRII
DNIPVLSWLLLKGKCHHCSHKISARYPLIELLTAAMCAIVAWQLGYSEYSLALIVFTFVLISATFIDFDTMLLPDQLTLP
LMWLGIALALLGISPISLTDSVIGAMAGYLCLWSIFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPLIVLMSSVVGV
LFGLVQLRMQKKGIDVAFPFGPYLAIAGWISALWGEQIIQYYLTSYIGV

Nucleotide

• Length: 870 bp

>NTDB_id=207939 BSZ05_RS04180 WP_088876262.1 930083..930952(+) (pilD) [Vibrio mediterranei strain QT6D1]
ATGGACGCATTTTCTTATTATCCTTGGCTCTTCCCTGCTTTTGCGGCTCTCTTCGGCTTGATCGTTGGCAGCTTTTTGAA
TGTCGTCATTTATCGATTACCGATAATGATGGAGCGTGGTTGGCGCGAAGAATGTGCCGAAGCTTTTCCTGAGTACAAAA
TTGCCCCTCCAGAAGATAAATTTAACCTTAGCGTGCCGCGCTCAGCATGCCCTAAATGCCATACACCGATTCGAATTATC
GATAATATTCCTGTACTCAGCTGGTTGTTACTTAAGGGCAAGTGTCATCATTGCAGTCATAAAATCAGTGCTCGTTATCC
ACTTATTGAGCTCCTGACAGCAGCCATGTGTGCAATCGTAGCGTGGCAACTTGGGTATAGCGAATACAGCTTAGCGTTAA
TCGTCTTTACCTTCGTGCTTATCAGCGCCACTTTCATTGACTTCGATACCATGCTGTTGCCAGACCAGCTTACCTTACCT
CTAATGTGGTTGGGCATTGCACTAGCATTATTAGGTATCTCTCCAATTTCGTTAACGGATTCTGTAATTGGTGCCATGGC
TGGCTACCTCTGCTTATGGTCCATTTTCTGGCTGTTTAAACTACTAACAGGTAAAGAAGGCATGGGCTACGGTGACTTTA
AGTTGCTGGCAGCTCTCGGAGCATGGTTAGGCTGGCAACACTTGCCTTTGATCGTCTTAATGTCATCCGTTGTTGGGGTT
TTATTTGGTCTCGTTCAATTGCGAATGCAAAAGAAAGGGATTGATGTTGCATTTCCTTTCGGCCCTTATCTCGCCATTGC
TGGTTGGATTAGCGCTTTGTGGGGCGAGCAAATTATTCAATACTACCTCACGTCGTATATAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter nosocomialis M2	52.045	93.08	0.484
pilD	Acinetobacter baumannii D1279779	51.301	93.08	0.478
pilD	Neisseria gonorrhoeae MS11	52.14	88.927	0.464