Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BST98_RS01000 Genome accession   NZ_CP018297
Coordinates   205312..207039 (+) Length   575 a.a.
NCBI ID   WP_370469523.1    Uniprot ID   -
Organism   Photobacterium damselae strain Phdp Wu-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200312..212039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST98_RS00980 (BST98_00975) pilM 202541..203539 (+) 999 WP_109374688.1 type IV pilus biogenesis protein PilM -
  BST98_RS00985 (BST98_00980) - 203536..204177 (+) 642 WP_068945318.1 PilN domain-containing protein -
  BST98_RS00990 (BST98_00985) - 204174..204764 (+) 591 WP_109374689.1 type 4a pilus biogenesis protein PilO -
  BST98_RS00995 (BST98_00990) - 204773..205288 (+) 516 WP_036764704.1 pilus assembly protein PilP -
  BST98_RS01000 (BST98_00995) pilQ 205312..207039 (+) 1728 WP_370469523.1 type IV pilus secretin PilQ Machinery gene
  BST98_RS01005 (BST98_01000) aroK 207369..207887 (+) 519 WP_036765246.1 shikimate kinase AroK -
  BST98_RS01010 (BST98_01005) aroB 207917..208996 (+) 1080 WP_005302661.1 3-dehydroquinate synthase -
  BST98_RS01015 (BST98_01010) - 209011..210513 (+) 1503 WP_109374691.1 SPOR domain-containing protein -
  BST98_RS01020 (BST98_01015) dam 210621..211463 (+) 843 WP_065172417.1 adenine-specific DNA-methyltransferase -
  BST98_RS01025 (BST98_01020) - 211447..211644 (-) 198 WP_036764707.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62710.18 Da        Isoelectric Point: 4.9002

>NTDB_id=207847 BST98_RS01000 WP_370469523.1 205312..207039(+) (pilQ) [Photobacterium damselae strain Phdp Wu-1]
MKRMLSVSLGWQRCWVVMLCCWLGLSQAAIAAGMNIVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDI
FDTAIKDDMLYVLDVVDFATVVRSIETFRTEKGSKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYK
GKPISINFQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATN
ERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEDIITAL
DIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQ
VAKLGDILLDLELSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKL
VLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMG
KRELLIFVTPKIITQ

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=207847 BST98_RS01000 WP_370469523.1 205312..207039(+) (pilQ) [Photobacterium damselae strain Phdp Wu-1]
ATGAAAAGGATGTTATCGGTCAGCTTGGGTTGGCAACGTTGTTGGGTAGTTATGTTGTGCTGTTGGCTTGGTCTCTCCCA
AGCTGCCATTGCTGCTGGCATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAACCGTGGACGAG
GCGTGCTCACTGTTCAGTTAGCCAAACCTCAATCTTTGGTTGATATGCGCCGTTCAGGGAAGCAATTACACATCGATATC
TTTGATACCGCGATTAAAGATGACATGTTGTATGTACTCGATGTGGTCGACTTTGCAACGGTTGTCCGTTCGATTGAAAC
ATTTCGCACCGAGAAAGGCAGCAAGCTTATTCTCAATATGGCTGGCGTATTTGATTATGATTACCAATTAAAAGGCTCTC
GTCTTGAAGTTGTTTTGAACGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAA
GGTAAGCCCATCTCCATTAACTTCCAAGATGTTCCTGTGCGTAACGTATTGCAGTTGGTTGCCGAATATAATGATTTTAA
TCTCGTGGTTTCCGATACTGTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTCGATATTA
TTTTGCAATCAAAAGGGTTGGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAAT
GAGCGTCAAGAGATGGAAGCCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGC
TAAAGCAGGAGATATCGCAGACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGCTATCTCAACGCGGGTCTTTGCATG
TTGATGAGCGTACTAATGCCATAATCATTAAAGATATTCCTGAGAGTATTGATAGCATTGAAGATATTATCACGGCACTA
GATATTCCCGTTAAACAGGTTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACG
TTGGGGTGTCGTTAATCAAAACGGTAGTACAACCATTGGGGGCTCAATTGAAGGTAACTTGGCCAGTTCGGGCTTATTGG
GTGATGACGCGACTGTTGATGATTTCTTAAATGTAAATTTAGGTGCAATTACTCCTGGGGCATCGAGTATTGCATTTCAG
GTGGCAAAACTGGGCGATATTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCGAAAGCAGAGATTATTTCTAG
TCCTCGATTAGTAACCACCAATAAAAAAGCGGCTTACATCGAACAAGGTACAGAGATCCCTTATTTAGAAGCGGCATCTA
GTGGTGCGGTATCGGTAGACTTTAAAAAGGCCGTATTGAGCTTGATGGTCACACCACAAATTACCCCTGATGATAAATTG
GTGCTCGATCTGCTGGTAACGCAAGATAAAGTAGGGGAAACAGTTGTTACCGGAACCGGAGAAGCGGTCGCTATCGATAC
TCAACGAATTGGCACGCAAGTTCTGGTCAATAATGGCGAGACTGTAGTCTTAGGGGGTATCTATCAGCATCAGGTGAATA
ATTCTGTCCGTAAAGTCCCTTTGTTGGGCGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGC
AAGCGTGAACTGTTGATTTTCGTCACACCCAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(260-326)

Secretin and TonB N terminus short domain (STN)

(186-234)

Bacterial type II and III secretion system protein (Secretin)

(415-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

61.121

99.304

0.607
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

61.121

99.304

0.607
  pilQ Vibrio campbellii strain DS40M4

60.932

97.043

0.591
  pilQ Legionella pneumophila strain Lp02

42.647

94.609

0.403
  pilQ Legionella pneumophila strain ERS1305867

42.647

94.609

0.403
  pilQ Pseudomonas aeruginosa PAK

41.103

97.739

0.402
  comQ Acinetobacter baylyi ADP1

40.388

98.609

0.398
  pilQ Acinetobacter baumannii D1279779

39.138

100

0.395
  pilQ Acinetobacter baumannii strain A118

39.138

100

0.395

Multiple sequence alignment