Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BSR20_RS00340 Genome accession   NZ_CP018189
Coordinates   58129..59397 (+) Length   422 a.a.
NCBI ID   WP_045772364.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53129..64397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS00310 (BSR20_00310) - 53462..53899 (-) 438 WP_045772361.1 LytTR family DNA-binding domain-containing protein -
  BSR20_RS00315 (BSR20_00315) - 54078..54383 (+) 306 WP_002886319.1 hypothetical protein -
  BSR20_RS00320 (BSR20_00320) mutL 54433..56370 (+) 1938 WP_021143432.1 DNA mismatch repair endonuclease MutL -
  BSR20_RS00325 (BSR20_00325) - 56501..56722 (+) 222 WP_002886321.1 hypothetical protein -
  BSR20_RS00330 (BSR20_00330) ruvA 56879..57469 (+) 591 WP_014633718.1 Holliday junction branch migration protein RuvA -
  BSR20_RS00335 (BSR20_00335) - 57478..58032 (+) 555 WP_014633717.1 DNA-3-methyladenine glycosylase I -
  BSR20_RS00340 (BSR20_00340) cinA 58129..59397 (+) 1269 WP_045772364.1 competence/damage-inducible protein A Machinery gene
  BSR20_RS00345 (BSR20_00345) recA 59433..60572 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  BSR20_RS00350 (BSR20_00350) - 60703..61689 (+) 987 WP_002886406.1 IS30 family transposase -
  BSR20_RS00355 (BSR20_00355) spx 61827..62225 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45724.95 Da        Isoelectric Point: 5.3152

>NTDB_id=206885 BSR20_RS00340 WP_045772364.1 58129..59397(+) (cinA) [Streptococcus salivarius strain ICDC3]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGTIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTVLKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEVHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQAILQEDMI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=206885 BSR20_RS00340 WP_045772364.1 58129..59397(+) (cinA) [Streptococcus salivarius strain ICDC3]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGATAATGAAAACCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACTTAACCAAGCAAACA
CTGGCTAAGTTCTTAGGAAAAGAACTCGTTTTTGATGAGGAAGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGACTATTCCCTTACAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
AGAAAGTCAATTAGTGACTGTTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATATGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAGAAACAA
ATTCGTTCGACTAAAACTCTAGATGGAAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGCTTGCTTAAGCACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGTACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTATATTACAAGAAGACATGATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(264-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.702

99.289

0.742
  cinA Streptococcus mitis NCTC 12261

73.986

99.289

0.735
  cinA Streptococcus pneumoniae TIGR4

73.27

99.289

0.727
  cinA Streptococcus pneumoniae Rx1

73.031

99.289

0.725
  cinA Streptococcus pneumoniae R6

73.031

99.289

0.725
  cinA Streptococcus pneumoniae D39

72.792

99.289

0.723
  cinA Streptococcus mutans UA159

71.703

98.815

0.709
  cinA Streptococcus suis isolate S10

55.288

98.578

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

99.763

0.448

Multiple sequence alignment