Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   BSR19_RS09735 Genome accession   NZ_CP018187
Coordinates   2107829..2108929 (-) Length   366 a.a.
NCBI ID   WP_156247047.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102829..2113929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS09695 (BSR19_09825) - 2103438..2103635 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  BSR19_RS09700 (BSR19_09830) - 2103886..2105079 (-) 1194 WP_138261572.1 acetate kinase -
  BSR19_RS09705 (BSR19_09835) comYH 2105136..2106092 (-) 957 WP_138261573.1 class I SAM-dependent methyltransferase Machinery gene
  BSR19_RS09710 (BSR19_09840) comGG 2106137..2106454 (-) 318 WP_156247046.1 competence type IV pilus minor pilin ComGG -
  BSR19_RS09715 (BSR19_09845) comYF 2106432..2106869 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR19_RS09720 (BSR19_09850) comGE 2106856..2107086 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  BSR19_RS09725 (BSR19_09855) comYD 2107118..2107546 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR19_RS09730 (BSR19_09860) comYC 2107506..2107832 (-) 327 WP_002885815.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR19_RS09735 (BSR19_09865) comYB 2107829..2108929 (-) 1101 WP_156247047.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSR19_RS09740 (BSR19_09870) comYA 2108811..2109752 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR19_RS09745 (BSR19_09875) - 2109834..2110196 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41676.70 Da        Isoelectric Point: 10.0357

>NTDB_id=206879 BSR19_RS09735 WP_156247047.1 2107829..2108929(-) (comYB) [Streptococcus salivarius strain ICDC2]
MPVKISKAIRQPAGTNSWKAWFNKDISLKGISKGKKLKINQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKDNWAVQLVQIFPQLFFVSLCGLLVLSLILYLWVKHQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVSLMQEQKSKLFRELGADLEEALMLGQSFPDRIATHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFIIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=206879 BSR19_RS09735 WP_156247047.1 2107829..2108929(-) (comYB) [Streptococcus salivarius strain ICDC2]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAACAGTTGGAAGGCTTGGTTCAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAAGTCAAGGTTATCCAGCTTTTCAAACAACTTCTAA
AAGCAGGGTTTACTTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCATTATCTCTTATG
AAAGCAAGCTTAATGCGAGGCGACAGGCTAGACCAGATGTTTGCGTCAGTGGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGCATGACCAAGGTTC
GCAAGAAACTCATGGAGGTAGCGACCTACCCTATCCTACTCCTGGGTTTCCTGATTCTGATTATGTTAGGACTTAAAAAT
TATCTTTTACCTCAACTGTTAGAGGGTGATGGTAAGGATAATTGGGCTGTACAGTTGGTTCAAATCTTTCCCCAGCTCTT
CTTTGTGAGTTTGTGTGGACTTCTTGTATTAAGCTTAATTCTTTATCTATGGGTCAAACACCAGCCAGCCCTTGTCTTTT
ACCGACGAATGGCAAAAATCCCTTTTATAGGGCAAACTGTCAGGCTATATACGACTGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGACAAGGCATTGACCTGTTAGATTTGGTTTCTCTTATGCAAGAGCAAAAGTCCAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAGGCCTTAATGCTAGGACAGAGTTTTCCTGACCGTATTGCTACTCACCCTTTTTTCACTAAGG
AACTATCCTTGATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTATTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.81

93.716

0.514
  comYB Streptococcus mutans UA159

54.81

93.716

0.514
  comGB/cglB Streptococcus mitis NCTC 12261

50.432

94.809

0.478
  comYB Streptococcus gordonii str. Challis substr. CH1

50.729

93.716

0.475
  comGB/cglB Streptococcus mitis SK321

50

92.35

0.462
  comGB/cglB Streptococcus pneumoniae Rx1

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae D39

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae R6

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae TIGR4

49.704

92.35

0.459
  comGB Lactococcus lactis subsp. cremoris KW2

45.946

90.984

0.418

Multiple sequence alignment