Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CNQ47_RS10415 Genome accession   NZ_CP023388
Coordinates   2078139..2079566 (-) Length   475 a.a.
NCBI ID   WP_001682997.1    Uniprot ID   -
Organism   Escherichia coli strain 1105     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2073139..2084566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS10390 (CNQ47_10385) yeeZ 2073194..2074018 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  CNQ47_RS10395 (CNQ47_10390) yeeY 2074064..2074993 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CNQ47_RS26550 yoeI 2075208..2075270 (+) 63 WP_010723108.1 membrane protein YoeI -
  CNQ47_RS10400 (CNQ47_10395) plaP 2075260..2076618 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CNQ47_RS10405 (CNQ47_10400) tsuA 2076797..2077855 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  CNQ47_RS10410 (CNQ47_10405) tsuB 2077869..2078096 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CNQ47_RS10415 (CNQ47_10410) sbcB 2078139..2079566 (-) 1428 WP_001682997.1 exodeoxyribonuclease I Machinery gene
  CNQ47_RS10420 (CNQ47_10415) dacD 2079775..2080941 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CNQ47_RS10425 (CNQ47_10420) sbmC 2081060..2081533 (+) 474 WP_001105375.1 DNA gyrase inhibitor SbmC -
  CNQ47_RS10430 (CNQ47_10425) yeeA 2081731..2082789 (+) 1059 WP_001200890.1 FUSC family protein -
  CNQ47_RS10435 (CNQ47_10430) tmaR 2082961..2083290 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ47_RS10440 (CNQ47_10435) - 2083390..2083833 (-) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  CNQ47_RS10445 (CNQ47_10440) pduU 2083838..2084188 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54511.80 Da        Isoelectric Point: 5.6070

>NTDB_id=206879 CNQ47_RS10415 WP_001682997.1 2078139..2079566(-) (sbcB) [Escherichia coli strain 1105]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYIFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=206879 CNQ47_RS10415 WP_001682997.1 2078139..2079566(-) (sbcB) [Escherichia coli strain 1105]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATATCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment